Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327C07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   4.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   4.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.8  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.7  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 77  KRKNKR*LQYILRLFLINHISEKK 6
           K  N++  +YI+R+FLI+     K
Sbjct: 67  KSTNEKITRYIIRMFLISQQKTSK 90


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 77  KRKNKR*LQYILRLFLINHISEKK 6
           K  N++  +YI+R+FLI+     K
Sbjct: 50  KSTNEKITRYIIRMFLISQQKTSK 73


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 141 FFGSVVKTVHIVSRFSCIQFGPFLFTTETKLFVFEIPF 254
           F G+   +V +    SC+   P +F +  K+ +   PF
Sbjct: 83  FDGTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPF 120


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 455 KVRQLREQKKIAKRVQIDTKLKQAAEKKQML 363
           K  Q+R+QKK+        K + A EK++ L
Sbjct: 848 KKHQIRKQKKMELARHAADKWRGAIEKRKTL 878


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 141 FFGSVVKTVHIVSRFSCIQFGPFLFTTETKLFVFEIPF 254
           F G+   +V +    SC+   P +F +  K+ V   PF
Sbjct: 83  FDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPF 120


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 141 FFGSVVKTVHIVSRFSCIQFGPFLFTTETKLFVFEIPF 254
           F G+    V +    SC+   P +F +  K+ +   PF
Sbjct: 151 FDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPF 188


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 141 FFGSVVKTVHIVSRFSCIQFGPFLFTTETKLFVFEIPF 254
           F G+    V +    SC+   P +F +  K+ +   PF
Sbjct: 151 FDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPF 188


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 213  KERVQIEYKRIYSQYGRF*QRFQKIG 136
            +  +QI   + Y+QY    Q F K+G
Sbjct: 1039 EHHLQIMNLKTYTQYSVVVQAFNKVG 1064


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 439 LNWRTFSTRDCAACLA 486
           L+W+ ++T +  ACL+
Sbjct: 122 LDWKYYTTNESHACLS 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,259
Number of Sequences: 438
Number of extensions: 1573
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)