Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327C05f
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 118 4e-28
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 1.3
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 27 1.8
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 26 2.3
SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr... 26 2.3
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 26 3.1
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 4.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.4
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 5.4
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 25 7.2
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 24 9.5
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 24 9.5
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 24 9.5
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 24 9.5
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 118 bits (284), Expect = 4e-28
Identities = 59/104 (56%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Frame = +1
Query: 115 MSALDQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK 291
MS+L+QLK TVV +DTGDFE++ +YKP DATTNPSLIL+A+ QY ++D A+ Y K
Sbjct: 1 MSSLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAK 60
Query: 292 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFD 423
G SI Q+ D L + FG +IL I+PGRVS EVDAR SFD
Sbjct: 61 AKGGSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFD 104
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 416 DNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSMELPL 294
+N S+ ++ I N S P +S + +SAT S+E+P+
Sbjct: 170 ENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIEIPI 210
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 1.8
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 76 VSMSGEPD-TKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ 252
VS S PD TKR S L ++K + ++ K+ KP+ T+ + L+ A M
Sbjct: 141 VSQSFFPDVTKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIELAKA-MFN 199
Query: 253 YQHI 264
YQ +
Sbjct: 200 YQDV 203
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 2.3
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 148 TVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAE 327
T +AD + + + D T L+L + G+E Y D A N S+EE + +
Sbjct: 273 TTIADYKEVAIQNKIEDDDTWTAQELVLLSEGVEMYSD--DWAKVASHVNTKSVEECILK 330
Query: 328 TLDMLS 345
L++ S
Sbjct: 331 FLNLPS 336
>SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 2.3
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 37 YQVYYHNQCNISLVSMSGEP--DTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTD 204
YQV+ + L S +G+ D K SAL ++++ + D + A+K+ KP D
Sbjct: 36 YQVFREAGYEVQLTSETGKCKFDDHSIKKSALGEVERDAFDNKDNEFWYALKDIKPAD 93
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 3.1
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = -2
Query: 363 FTPKKHTQHIQSFSHLFFNGASIILSIFNS 274
FTPK + ++++ FNG+ + +S++N+
Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 377 IIFNISHPKSTLSISKVSATCSSMELPLSF 288
II N+ KS L+ KV A CS + LSF
Sbjct: 596 IIQNVEKLKSYLNSFKVQAECSEISKILSF 625
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 5.4
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +1
Query: 124 LDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK---- 291
LDQLK H T+V GD + + +P A E + L KA++ G
Sbjct: 1979 LDQLKIHETLVHSLGDIHEKARKLLAEFSASP-----AGRFEWFDGYLLKAVEEGHWFVL 2033
Query: 292 DNGSSIEEQVAETLDML 342
DN + V + L+ L
Sbjct: 2034 DNANLCSPAVLDRLNSL 2050
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 5.4
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 277 IKYGKDNGSSIEEQVAETLDMLSVLFGCEIL-KIIPGRVSVEVDARLSFDKVR 432
+ Y SSI+ Q+A + + S+ + IIP VS D RLSFD ++
Sbjct: 240 VSYAVSYVSSIDFQIAGFMLLSSIAASLPLSPSIIPPLVSAITD-RLSFDNIK 291
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 24.6 bits (51), Expect = 7.2
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 100 TKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQH 261
+KR S LD K+ + G+ EA+ K TD+TT PS + +A Q ++
Sbjct: 2 SKRKSSSILDFFKKSNNGKNMWGN-EAVSVEK-TDSTTKPSTVKNAISSSQIKN 53
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 24.2 bits (50), Expect = 9.5
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 124 LDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQ 258
LDQ+K ++ V D + T +P A G+EQ Q
Sbjct: 714 LDQVKSGTSSVMDLSSSRELSNLNERSITIDPRAEEQAQGLEQEQ 758
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 24.2 bits (50), Expect = 9.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 437 FHLTLSNDNLASTSTDTRPGIIFNISHPKST-LSISKVSATCSSM 306
F T S D ++T+TD RP ++ +S S + S T S++
Sbjct: 613 FTKTTSKDTKSATTTDERPSDFIRLNSEESVGTSSLRTSQTTSTI 657
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 24.2 bits (50), Expect = 9.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 361 HTQKAHSAYPKFQPLVLQWSFHYPF 287
H Q+ +++ PKF P V Q H PF
Sbjct: 152 HLQELYASNPKFYPCVNQIELH-PF 175
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 24.2 bits (50), Expect = 9.5
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = -3
Query: 404 STSTDTRPGIIFNISHPKSTLSISKVSATCSSMELPL 294
S+ DT P ++ + S L + A C+ LP+
Sbjct: 278 SSLNDTFPSLVSTVVKMSSKLHVPSTEAICTICNLPM 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,953
Number of Sequences: 5004
Number of extensions: 42233
Number of successful extensions: 124
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -