Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327C05f
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312... 63 1e-10
08_02_0459 + 17420156-17420976,17422291-17424199 29 1.7
04_04_1498 + 34002677-34003104,34004427-34004532,34004643-340048... 29 2.3
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 28 3.1
06_03_1045 - 27111771-27112097,27112205-27112330,27112434-271126... 28 3.1
12_01_0740 + 6646471-6649407 27 5.3
12_01_0722 + 6355972-6359031 27 5.3
12_01_0384 + 3012359-3012404,3012641-3012825,3013014-3013045,301... 27 9.3
04_03_0797 + 19744815-19745030,19745190-19745273,19745375-197454... 27 9.3
01_01_0241 + 1992553-1993231,1993820-1993918,1994611-1994649,199... 27 9.3
01_01_0233 - 1957104-1958041,1958213-1958467,1959420-1960136,196... 27 9.3
>08_01_0355 -
3122374-3122520,3122912-3123047,3123124-3123221,
3123724-3123801,3123876-3123945,3124452-3124516,
3124606-3124686,3124822-3124926,3125002-3125085,
3125175-3125250,3125358-3125436,3125526-3125646,
3125768-3125827
Length = 399
Score = 62.9 bits (146), Expect = 1e-10
Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Frame = +1
Query: 115 MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGME--QYQHILDKAIKYG 288
++ LD + S +V DT F+ +++ PT AT + SL+L AG+ +++ +D A+ G
Sbjct: 63 VTELDAVASFSEIVPDTVVFDDFEKFAPTAATVSSSLLLGIAGLPDTKFKSAIDTALADG 122
Query: 289 KDNG-SSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFD 423
+ N E++++ L G E+ ++PGRVS E+DARL++D
Sbjct: 123 ECNTMEKPEDRMSCFLTKALANVGAEMAHLVPGRVSTEIDARLAYD 168
>08_02_0459 + 17420156-17420976,17422291-17424199
Length = 909
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 37 YQVYYHNQCNIS---LVSMSGEPDTKRTKMSALDQLKQHSTVVADTGD 171
YQVY + N S VS+S PD R + L ++ Q V + GD
Sbjct: 211 YQVYQQLKGNFSCSVFVSVSRNPDMMRILRTILSEVTQRDYAVTEAGD 258
>04_04_1498 +
34002677-34003104,34004427-34004532,34004643-34004811,
34004901-34005088,34005644-34005763
Length = 336
Score = 28.7 bits (61), Expect = 2.3
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Frame = +1
Query: 61 CNISLVSMSGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATT-------NP 219
CN L + G T KM+ L L +H T + K++KP++ T P
Sbjct: 203 CNDELRVVFGTDTTDMFKMNKL--LAKHITPLDPKDQIREAKKFKPSNVATQPMPLINQP 260
Query: 220 SLILSAA-----GMEQYQHILDKAIKYGKD--NGSSIEEQVAETL---DMLSVLFGCE 363
S+++S A GME D A++Y D + +E+ + ++ L LFGCE
Sbjct: 261 SVVISDALAKFIGMEGTVP-QDDALRYLWDYIKANQLEDAITGSILCDSKLQELFGCE 317
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 28.3 bits (60), Expect = 3.1
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +1
Query: 85 SGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHI 264
S EP ++T + A DQ K T+V G A K T +L + M ++
Sbjct: 3142 SAEPTKRKTVVGASDQAKASETIVDREGMMTAPYREKSLCPDTQHAL-RNVLEMSPSDNL 3200
Query: 265 LDKAIKYGKDNGSSIEEQVAETLDMLS 345
D G+++GS E ++ D ++
Sbjct: 3201 TDNPFA-GQEHGSFSEGSTTDSRDAIT 3226
>06_03_1045 -
27111771-27112097,27112205-27112330,27112434-27112673,
27113343-27113429,27113520-27113652,27113711-27113820,
27114308-27114424,27114526-27114610,27114693-27114796,
27115530-27115612,27115729-27115819
Length = 500
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 268 DKAIKYGKDNGSSIEEQVAETLDMLSVLFGC-EILKIIPGRVSVEVDARLSFDKVR 432
+K + Y ++ G EE +A + + L +IPG+V+ VD R DKVR
Sbjct: 310 NKFLTYDEECGCFTEESLAGLVCTVGELLTWPSASNVIPGQVNFTVDIRAMDDKVR 365
>12_01_0740 + 6646471-6649407
Length = 978
Score = 27.5 bits (58), Expect = 5.3
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -2
Query: 348 HTQHIQSFSHLFFNGASIILSIFNSFIKNVLILFHTSSREY*AWICSSICRLIFFHGLKI 169
H Q Q + L + G I +S I L+L S+ E+ I SSI L HGL +
Sbjct: 786 HGQTYQFTAALTYKGNDITISK----ILRSLVLIDVSNNEFDGSIPSSIGELALLHGLNM 841
Query: 168 S 166
S
Sbjct: 842 S 842
>12_01_0722 + 6355972-6359031
Length = 1019
Score = 27.5 bits (58), Expect = 5.3
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -2
Query: 348 HTQHIQSFSHLFFNGASIILSIFNSFIKNVLILFHTSSREY*AWICSSICRLIFFHGLKI 169
H Q Q + L + G I +S I L+L S+ E+ I SSI L HGL +
Sbjct: 827 HGQTYQFTAALTYKGNDITISK----ILRSLVLIDVSNNEFDGSIPSSIGELALLHGLNM 882
Query: 168 S 166
S
Sbjct: 883 S 883
>12_01_0384 +
3012359-3012404,3012641-3012825,3013014-3013045,
3013387-3013514,3013695-3013940,3014200-3014284,
3014369-3014387,3014563-3014667
Length = 281
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -3
Query: 314 SSMELPLSFPYLIALSRMC*YCSIPAAESIKLGFVVASVGLYSFMAS 174
SS+E F YL+ R C AA +I G VAS + MAS
Sbjct: 137 SSIEAKKRFSYLVTSKRKCACKKSAAALNIMDGSTVASAEKHKGMAS 183
>04_03_0797 +
19744815-19745030,19745190-19745273,19745375-19745473,
19745588-19745695,19747332-19747700
Length = 291
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 188 NISLQMLLQIQA*YSLLLVWNSISTFLIKLLNMERI 295
N++ + I+A +LLL + S+S LIK+ +++I
Sbjct: 108 NVTTITITDIRAGCNLLLSYTSVSVMLIKIFKLKQI 143
>01_01_0241 +
1992553-1993231,1993820-1993918,1994611-1994649,
1994806-1995857
Length = 622
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 16 NLSDKGKYQVYYHNQCNISLVSMSG 90
N SD G Y +Y CN ++V + G
Sbjct: 178 NYSDSGDYPAFYMEGCNATVVPVLG 202
>01_01_0233 -
1957104-1958041,1958213-1958467,1959420-1960136,
1960728-1961403
Length = 861
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 16 NLSDKGKYQVYYHNQCNISLVSMSG 90
N SD G Y +Y CN ++V + G
Sbjct: 177 NYSDSGDYPAFYMEGCNATVVPVLG 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,636,596
Number of Sequences: 37544
Number of extensions: 231903
Number of successful extensions: 528
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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