Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327C05f
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...   133   7e-32
AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical...    28   3.7  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    28   3.7  
Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical p...    27   4.8  
Z73911-4|CAA98141.2|  625|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score =  133 bits (321), Expect = 7e-32
 Identities = 64/103 (62%), Positives = 81/103 (78%)
 Frame = +1

Query: 115 MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKD 294
           MS L+QLK  S VVADTGDF A+KE++PTDATTNPSLIL+A+ MEQY  ++D+++ Y K+
Sbjct: 1   MSVLEQLKGASVVVADTGDFNAIKEFQPTDATTNPSLILAASKMEQYAALIDQSVAYAKE 60

Query: 295 NGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFD 423
           + S  +E +   +D L V+FG EILK IPGRVS EVDARLSFD
Sbjct: 61  HASGHQEVLQAAMDRLFVVFGKEILKTIPGRVSTEVDARLSFD 103


>AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical
           protein Y38E10A.17 protein.
          Length = 586

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +1

Query: 55  NQCNISLVSMSGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMK--EYKPTDATTNPSLI 228
           N  +++  +++ + D K       D +      VAD G    MK  E KP D  T   +I
Sbjct: 223 NAQDVAKAAVADKVDQKVVDAIGKDMVVAVQVDVADNG-MPVMKVLEGKPKDKETPVGII 281

Query: 229 LSAAGMEQYQHILDKAIKYGKD 294
           + A    Q+  I+ + +  GKD
Sbjct: 282 VKANDQVQFVQIVGRELGGGKD 303


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
           protein 10 protein.
          Length = 2302

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +1

Query: 64  NISLVSMSGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTD--ATTNPSLILSA 237
           NIS+  +   P TKRT+++  D+ K   T V  T       E    D  + T   L L  
Sbjct: 196 NISVDVIKLAPTTKRTRVTVPDRPKLMETTVPVTSSSSTSSEMIEVDGESETQEDLTLGG 255

Query: 238 AGME 249
            G E
Sbjct: 256 GGAE 259


>Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical
           protein T09E11.6 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 351 KHTQHIQSFSHLFFNGASIILSIFNSFIKNVLILFH 244
           +H Q + SF+HL FN   +I S  NS ++    L H
Sbjct: 413 EHFQAVASFTHLMFN--KVIPSFDNSIVECTAELLH 446


>Z73911-4|CAA98141.2|  625|Caenorhabditis elegans Hypothetical
           protein T12A7.1 protein.
          Length = 625

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +1

Query: 196 PTDATTNPSLILSAAG-MEQYQHILDKAIKYGKDNGSSIEEQVA-ETLDMLSVLFGCEIL 369
           P D     S ++   G M  Y+H L     YG  N S I  +VA +   M+      +IL
Sbjct: 401 PLDLNRQSSSVVGINGVMNAYRHALQNVTLYGPTNFSPIIVEVANKAQKMMKTTARYQIL 460

Query: 370 KIIPGRVSVEVDARLS 417
            II   +  ++ A ++
Sbjct: 461 LIITDGIISDMYATIN 476


>AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical
           protein Y67H2A.10 protein.
          Length = 608

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 355 QKAHSAYPKFQPLVLQWSFHYPFHI**LYQECADTVPYQQQ 233
           Q  HS YP+ Q +  Q   H P H    YQ+      YQQQ
Sbjct: 479 QPQHSPYPQQQQMHHQMVQHSPHH----YQQQQQQQQYQQQ 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,601,115
Number of Sequences: 27780
Number of extensions: 223738
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)