Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327C05f
(454 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 23 1.2
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 2.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 2.7
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 22 2.7
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 22 3.6
S76959-1|AAB33934.1| 85|Apis mellifera olfactory receptor prot... 21 4.7
AF205594-1|AAQ13840.1| 156|Apis mellifera acid phosphatase prec... 21 4.7
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 8.3
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 21 8.3
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 8.3
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 8.3
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 21 8.3
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 23.4 bits (48), Expect = 1.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 355 QKAHSAYPKFQPLVLQWSFHYPFHI 281
++ Y +FQ L L+ FHY ++
Sbjct: 9 RRGRQTYTRFQTLELEKEFHYNHYL 33
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.6 bits (46), Expect = 2.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 242 VWNSISTFLIKLLNMERIMEAPLKNKWL 325
+W+ ST++ K+ N + + L+N WL
Sbjct: 318 IWDYDSTYIPKVKNKKAGSKHLLQNTWL 345
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 2.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 318 LFFNGASIILSIFNSFIKNVLILFHTS 238
LF N AS+ + IFN I +L++ H S
Sbjct: 268 LFLNMASVFMRIFN-LICMMLLIGHWS 293
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.2 bits (45), Expect = 2.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 374 IFNISHPKSTLSISKVSATCSSMELPLS 291
++ ISHPK L + K E P+S
Sbjct: 327 VYAISHPKYRLELQKRLPWLELQEKPIS 354
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.8 bits (44), Expect = 3.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 378 NNF*YFTPKKHTQHIQSFSHLFFNGASIILSI-FNSFI 268
+NF TP++ Q I S + F A II +I + SFI
Sbjct: 430 HNFTTMTPQEIAQWIDRRSRIVFPVAFIIFNILYWSFI 467
>S76959-1|AAB33934.1| 85|Apis mellifera olfactory receptor
protein.
Length = 85
Score = 21.4 bits (43), Expect = 4.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -3
Query: 377 IIFNISHPKSTLSISKVSATCSS 309
I+FNI H S K TC S
Sbjct: 33 ILFNILHMSSAEGWFKAIGTCGS 55
>AF205594-1|AAQ13840.1| 156|Apis mellifera acid phosphatase
precursor protein.
Length = 156
Score = 21.4 bits (43), Expect = 4.7
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +2
Query: 227 YSLLLVWNSISTFLIKLLNMERIMEAP 307
Y + L +NS+ F + +++++E+P
Sbjct: 21 YFIFLYFNSLVRFRRFTIELDKVLESP 47
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 20.6 bits (41), Expect = 8.3
Identities = 9/40 (22%), Positives = 19/40 (47%)
Frame = +1
Query: 64 NISLVSMSGEPDTKRTKMSALDQLKQHSTVVADTGDFEAM 183
N L S+ + + + L ++HST+ TG++ +
Sbjct: 171 NAGLQSVGISNEVELPQFRVLGHRQRHSTIHLSTGNYSRL 210
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 20.6 bits (41), Expect = 8.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 334 DMLSVLFGCEILKIIP 381
D++ V GC I ++IP
Sbjct: 224 DLIIVQTGCTITRVIP 239
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 20.6 bits (41), Expect = 8.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 315 FFNGASIILSIFNSFIKNVLILFHTS 238
F N AS+ + IFN I +L++ H S
Sbjct: 237 FLNMASVFMRIFN-LICMMLLIGHWS 261
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 20.6 bits (41), Expect = 8.3
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -3
Query: 368 NISHPKSTLSISKVSATCSSMELPLSFPYLIALSRMC 258
N P+S S S+ S +++ +S+P L+ C
Sbjct: 319 NNGSPRSPESNSRCSVKREKIKISVSYPSTETLNTKC 355
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 20.6 bits (41), Expect = 8.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 334 DMLSVLFGCEILKIIP 381
D++ V GC I ++IP
Sbjct: 224 DLIIVQTGCTITRVIP 239
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,407
Number of Sequences: 438
Number of extensions: 2803
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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