Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327C04f
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   122   2e-29
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   121   7e-29
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   4.6  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   8.1  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    25   8.1  
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    25   8.1  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  122 bits (295), Expect = 2e-29
 Identities = 62/133 (46%), Positives = 83/133 (62%), Gaps = 2/133 (1%)
 Frame = -3

Query: 485 TGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQD 306
           TG+RVFGAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  D
Sbjct: 155 TGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDD 214

Query: 305 DEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPS--XXXXXXXXXXXXXKRWNKRK 132
           DE+ +++QFS  I  G+ +D +E IY +A+  IR DPS                ++ +RK
Sbjct: 215 DEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRK 274

Query: 131 LTLAERKNRIKQK 93
           LT  ERK R   K
Sbjct: 275 LTAEERKERFNAK 287


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  121 bits (291), Expect = 7e-29
 Identities = 62/133 (46%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
 Frame = -3

Query: 485 TGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQD 306
           TG+RVFGAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  D
Sbjct: 155 TGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDD 214

Query: 305 DEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPS--XXXXXXXXXXXXXKRWNKRK 132
           DE+ +++QFS  I  G+ +D +E IY +A+  IR DPS                +  +RK
Sbjct: 215 DEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRK 274

Query: 131 LTLAERKNRIKQK 93
           LT  ERK R   K
Sbjct: 275 LTAEERKERFNAK 287


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 335  AEYMRSLEQDDEDSFKRQFSKYIK 264
            +EY+++L   D  SFK+ F K+I+
Sbjct: 948  SEYLQALSNLDSRSFKQFFQKFIQ 971


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 8   FFFXNASKIIFRAFKLPPEP 67
           F +  AS  I R+FK+PP+P
Sbjct: 280 FVWDIASGRILRSFKIPPQP 299


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 5   FFFFXNASKIIFRAFKLP 58
           FF F + S+++FR+ +LP
Sbjct: 70  FFSFSSISRLVFRSLRLP 87


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 362 RAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAI 240
           R  + GL VAEY R +E  D   F     ++ + G    A+
Sbjct: 277 RVALTGLTVAEYFRDIEGQDVLLFIDNIFRFTQAGSEVSAL 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,554
Number of Sequences: 5004
Number of extensions: 30480
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)