Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327C02f
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.0  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   1.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   1.8  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   3.1  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   4.2  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    24   9.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    24   9.6  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 166 SMESPQPXSAXTVLCSTLLSGRSTNATSPSTYTAAIXLNSSPXSLTHNVPXAV-DSLPIP 342
           S+ S    +A +   S+ +S  ST  TS ++ TAA   +++  S  +N    +  S P  
Sbjct: 231 SLNSTTSATATSSSISSTVSS-STPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSS 289

Query: 343 TPLWXISXTTA 375
           TPL   + TTA
Sbjct: 290 TPLSSANSTTA 300


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 108 PAKDGQYEDDRXCDKFFECVDGVATTXLCXDGLVFDPTIRK 230
           P     Y DD   ++  E V G   T +C   ++FD TIR+
Sbjct: 488 PTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTIRE 528


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 166 SMESPQPXSAXTVLCSTLLSGRSTNATSPSTYTAAIXLNSSPXSLTHNVPXAVDSLPIP 342
           S  S +P ++ T    +L   R    +SPS   AA     SP S TH+ P  + + P+P
Sbjct: 47  STSSQKPNTSFT----SLFGPRKQTTSSPSFSHAAPLHPLSPPSFTHSQP-QIQAQPVP 100


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 223 SGRSTNATSPSTYTAAIXLNSSPXSLTHNVPXAVDSLPIPTPL 351
           S R  + TSP+   AA  L S     +HN    V ++P  T +
Sbjct: 400 SMRRPSVTSPTFEVAARPLTSMDVRSSHNAETEVQAIPAATDI 442


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 244 TSPSTYTAAIXLNSSPXSLTHNVPXAVDSLPI--PTPL 351
           T   +YT+   LNSS    + +VP    SL I  PTP+
Sbjct: 160 THSQSYTSIDRLNSSSSHYSKDVPLLCGSLTIDCPTPI 197


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 337 WAKNPLRRGHCELGXGGWSSVXSPQCTL 254
           W  NPL      +G   W S+ S  C++
Sbjct: 82  WFVNPLLAARWTIGYLSWESMNSVSCSI 109


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +1

Query: 190 SAXTVLCSTLLSGRSTNATSPSTYTAAIXLN---SSPXSLTHNVPXAVDSLPIPTP 348
           S  ++L S+  S  ST+ +  S+ T++   +   SSP S++ ++  +   L  PTP
Sbjct: 575 SVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTP 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,530
Number of Sequences: 5004
Number of extensions: 25757
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)