Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327C02f
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888     29   1.3  
10_01_0236 + 2486371-2486952                                           29   1.8  
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481...    29   1.8  
06_03_0336 + 19671500-19672150,19672681-19673301                       27   9.5  
01_01_0242 + 1997427-1997429,1997893-1998580,2000199-2000234,200...    27   9.5  

>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
          Length = 213

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 264 CGDXTELQPPXPNSQCPRRSGFFAHPDPSVGNIXYNCIE 380
           CG   +  PP P +  P +  F+ +P P  G   + C E
Sbjct: 167 CGASCKPPPPPPPAIWPPQPSFYYYPPPPCGGYKFACEE 205


>10_01_0236 + 2486371-2486952
          Length = 193

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +1

Query: 175 SPQPXSAXTVLCSTLLSGRSTNATSPSTYTAAIXLNSSPXSLTHNVPXAVDSLP 336
           SP P    T   ++L S  S     P TY AA    S+P + T  +P  +  LP
Sbjct: 45  SPPPFQYTTYEAASLYSSLSLPLHLPYTYYAAAAAASAPATATPLLPRMLPPLP 98


>01_06_1656 +
           38946922-38947542,38947640-38947739,38948045-38948189,
           38948868-38948991,38949443-38949960,38950111-38950458,
           38950557-38950638,38951309-38951707,38951790-38951927,
           38952063-38952108,38952200-38952369
          Length = 896

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +2

Query: 173 SRHNQXLPGRSCVRPYYQEDQQMRPALQRTLRRXD*TPAPXA*LTMSP 316
           + H   LP RS  R   Q D+  RPA   T R+      P   L M P
Sbjct: 585 TNHANPLPTRSIKRKLLQFDKSNRPAYYGTWRKKSAVVGPRCPLKMDP 632


>06_03_0336 + 19671500-19672150,19672681-19673301
          Length = 423

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 171 GVATTXLCXDGLVFDPTIRKINKCDQPFNVHCGD 272
           G A   +C + +V   T+R++  C   F+V C D
Sbjct: 144 GGALCAVCLEDVVAGETVRRLPSCGHLFHVDCID 177


>01_01_0242 +
           1997427-1997429,1997893-1998580,2000199-2000234,
           2000786-2001114,2001178-2001855
          Length = 577

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 275 D*TPAPXA*LTMSPXQWILCPSRPLCG 355
           D  PA    LT++P  W+  P RP CG
Sbjct: 18  DCEPATCGNLTINPPFWLDEPGRPPCG 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,174,549
Number of Sequences: 37544
Number of extensions: 216732
Number of successful extensions: 555
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)