Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327C02f
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   4.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   4.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +3

Query: 222 IRKINKCDQPFNVHCG--DXTELQP 290
           I+  + CDQ  N H G  D + L+P
Sbjct: 216 IKNFDNCDQRINYHFGMTDNSRLEP 240


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 238 LLIFLIVGSNTRPS 197
           LL FL++ S TRPS
Sbjct: 7   LLFFLLLSSCTRPS 20


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 238 LLIFLIVGSNTRPS 197
           LL FL++ S TRPS
Sbjct: 7   LLFFLLLSSCTRPS 20


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 296 LXGLEFSXIAAVYVEGLVAFVD 231
           L G +   I  +Y+E L A+VD
Sbjct: 492 LEGWKVEKIQEIYLEALRAYVD 513


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +1

Query: 205 LCSTLLSGRSTNATSPSTYTAAIXLNSSPXSLTHNVPXAVDSLPIPTPLW 354
           L S L   R T+  + S     +  +S   ++  N   + D LP+   LW
Sbjct: 10  LLSPLTLNRITHILANSPAIIILGQDSKAKAIVVNTLISNDILPVCNGLW 59


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +1

Query: 205 LCSTLLSGRSTNATSPSTYTAAIXLNSSPXSLTHNVPXAVDSLPIPTPLW 354
           L S L   R T+  + S     +  +S   ++  N   + D LP+   LW
Sbjct: 48  LLSPLTLNRITHILANSPAIIILGQDSKAKAIVVNTLISNDILPVCNGLW 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,942
Number of Sequences: 438
Number of extensions: 1935
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)