Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327C01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.2  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    25   6.8  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   9.0  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    25   9.0  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = -2

Query: 409 VFCXXXXX*NFSDLTRRGGVIIL*GDTTQQFSLRLLWNTLEEIPKI*DVIMGDAYIVF 236
           V C      N  D    GG++    DT  Q  L   W +L+E   +  V++     +F
Sbjct: 643 VLCDDSPEGNLPDGEGEGGIVSNLEDTPAQLILSYSWRSLKETSSLLTVLLTKCLSLF 700


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 462 SPMTAYHRVNREIVSSFRFFVNCCCFRTSPTLQ 364
           SP+    R+   IVS+     +CC FR   T Q
Sbjct: 53  SPLLKARRMTATIVSNHNVGCSCCYFRQYSTKQ 85


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 379 SSKAAAINKKPKRTDDLAVHSMISG-HRTATYMPLPLAH 492
           ++  A +NKK    DD A HS  SG H  +    L L H
Sbjct: 16  NTTTALLNKKDGNDDDKAEHSKRSGYHGLSPLDALALKH 54


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 521 FSYTFDISISCANGNGMYVAVR*PLIIE*TARSSVRLGFLLIAAALEL 378
           +SY  D+ +S A G+G  ++   P++   + R+  RL  ++I    EL
Sbjct: 170 YSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTREL 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,176
Number of Sequences: 5004
Number of extensions: 36834
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)