Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327C01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-9|CAH04730.1|  522|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AY532645-1|AAS21318.1|  522|Caenorhabditis elegans egg laying de...    28   3.5  

>Z73971-9|CAH04730.1|  522|Caenorhabditis elegans Hypothetical
           protein C50H2.2a protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +1

Query: 163 KLRYYLTQI*LK--LSSYLLKMNFCVRIQYKH 252
           KL  Y+  I L   L+S+L+KMNF V + YKH
Sbjct: 142 KLILYVNYIVLAVLLNSFLIKMNFKVLMLYKH 173


>Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical
           protein C50H2.2b protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +1

Query: 163 KLRYYLTQI*LK--LSSYLLKMNFCVRIQYKH 252
           KL  Y+  I L   L+S+L+KMNF V + YKH
Sbjct: 108 KLILYVNYIVLAVLLNSFLIKMNFKVLMLYKH 139


>AY532645-1|AAS21318.1|  522|Caenorhabditis elegans egg laying
           defective EGL-47A protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +1

Query: 163 KLRYYLTQI*LK--LSSYLLKMNFCVRIQYKH 252
           KL  Y+  I L   L+S+L+KMNF V + YKH
Sbjct: 142 KLILYVNYIVLAVLLNSFLIKMNFKVLMLYKH 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,830,402
Number of Sequences: 27780
Number of extensions: 198769
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)