Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327C01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   3.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   4.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   4.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 118 NFYFWILRI*YQIHCKLRYYLTQI*LKLSSYLLKMNF 228
           N+  W L   Y +  KL Y++  I L    + L+  F
Sbjct: 204 NYSGWYLNHDYNLENKLNYFIEDIGLNTYYFFLRQAF 240


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 118 NFYFWILRI*YQIHCKLRYYLTQI*LKLSSYLLKMNF 228
           N+  W L   Y +  KL Y++  I L    + L+  F
Sbjct: 204 NYSGWYLNHDYNLENKLIYFIEDIGLNTYYFFLRQAF 240


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 512 TFDISISCANGNGMYVAVR*PLIIE*TARSSVRLGFLLIA 393
           T  I   CA     Y+AV  PLI     RS    G +++A
Sbjct: 123 TASILSLCAISIDRYLAVTQPLIYSRRRRSKRLAGLMIVA 162


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 257 HNHISNFWNFLKS 295
           HNHI N +  +KS
Sbjct: 56  HNHIQNIFKIIKS 68


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 257 HNHISNFWNFLKS 295
           HNHI N +  +KS
Sbjct: 39  HNHIQNIFKIIKS 51


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 54  HVCEQSYKYKYNMFKYITE*RELLFLDIENLI 149
           H C Q Y  K N  +Y      ++F +  NL+
Sbjct: 461 HFCRQMYAMKVNNAEYALLTAIVIFSERPNLL 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,616
Number of Sequences: 438
Number of extensions: 2422
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)