Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327B12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   231   5e-62
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    29   0.42 
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.42 
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   3.9  
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   9.0  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   9.0  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  231 bits (565), Expect = 5e-62
 Identities = 101/156 (64%), Positives = 124/156 (79%)
 Frame = -2

Query: 520 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIXAKLSVLPVRRGYWGNK 341
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII  KLS++P+RRGYWG  
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146

Query: 340 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTL 161
           +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST TL
Sbjct: 147 LGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTL 206

Query: 160 GNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 53
           GNF              LTP+LW + P  ++P  E+
Sbjct: 207 GNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEY 242


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 27/115 (23%), Positives = 49/115 (42%)
 Frame = -2

Query: 517 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIXAKLSVLPVRRGYWGNKI 338
           QTR G+         +G+ NG  G G   ++  + A + +   A  +++ + R Y     
Sbjct: 238 QTRKGKIASMYVLTVVGNRNGVAGFGEGKAESYSLAYKQSCGRAVKNMVYIPR-Y----- 291

Query: 337 GKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 173
               TV   +  K  +V + L   P G G+   P+  ++ + AG++D      GS
Sbjct: 292 -DKRTVYGVIHKKFHAVRLTLRSRPAGFGLRCNPILHEICRCAGIKDISGEILGS 345


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 228 RSFFRWLVYRTATPQLVVQL 169
           RS F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 335 KATHRPLQGHRQVWFCNSPADSCPSWYWN 249
           +A    L G  +   C   + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 129 LPRHMPTSLLTCGGT 85
           LPR +PTSLLT  G+
Sbjct: 27  LPRSIPTSLLTAAGS 41


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = -3

Query: 342 RSESHTPSLARSPASV--VL*QSG*FLPLVVLELCL-RQFLRSFFRWLVYRTATPQLVVQ 172
           R ++ TP    SP ++  +  Q+G  +P     L L R F  +  +   YRT T +L  +
Sbjct: 212 RLKTGTPPRLSSPINISKMTEQTGDEIPETFSFLNLERDFSPALPQRSCYRTYTTELTHE 271

Query: 171 LAPWEILLKPHMLP----LPRHMPT 109
           +    +   PHML      PR+ P+
Sbjct: 272 IVRKNLAFAPHMLAGDILSPRYCPS 296


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 55  TLSMET*SAGCPSTSQE*GRHMSWQWQHMWL*QNFPRCQLNHELRCSSPVHQP 213
           TLS  + S G P   +  GRH S  +   W+ Q F   + +     S   H P
Sbjct: 461 TLSFTSGSEGIPKGVK--GRHFSLAYYFDWMAQEFNLSESDRFTMLSGIAHDP 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,964
Number of Sequences: 5004
Number of extensions: 48634
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)