Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327B09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    27   1.3  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    27   2.2  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   5.2  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   5.2  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    25   6.8  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   6.8  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    25   9.0  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   9.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   9.0  

>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +2

Query: 257 GRPRTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTERPWVT--KVLC 430
           G P       +G++T   +GS   T    P +SPL  T S    RSS+   WV   K+  
Sbjct: 205 GSPTKSIYDQNGLTTPRPIGSDDLTHMYDPYTSPLR-TPSRTLSRSSSHYLWVRHGKLTR 263

Query: 431 SYHISRHP*P 460
           S  + +H  P
Sbjct: 264 SVSLLQHKTP 273


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 183 ELRTNTRCSEGHRKILQ--RRFIHHFTDDLGQSQQSIMGYPLLDRSGVDARRVRSRRN 350
           E + N     G   ++Q  +R ++   + +GQ +  I G P  +R  V+  R+RS R+
Sbjct: 16  EEKLNDLSKSGENSVIQSCQRLLNEIDEVIGQMEIEITGIPTSERGLVNG-RIRSYRS 72


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 302 TGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTER 406
           TG V S         +S PL+ + +SG PR+S  R
Sbjct: 470 TGDVKSFDSQESNIIESEPLSASNASGKPRTSVNR 504


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 269 TVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTE 403
           T +T Y   S+T SV ++   S     S+P++ T+SS +   S++
Sbjct: 249 TESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQ 293


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 226 IFLCPSEQRVLVRSSVFSIFAHRLFCRHWQKPDGL 122
           I+L P      +  S  S+ A  L  R W+KP  L
Sbjct: 824 IYLNPMWASAAMMFSSLSVLASSLLLRRWKKPKSL 858


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 19/83 (22%), Positives = 39/83 (46%)
 Frame = +1

Query: 208 QKDIGKFYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGA 387
           +KD+ +  + DS  +    ++ R+ L   IHY+   +S + +  +A  +   L ++    
Sbjct: 277 KKDLQEVLQSDSNHVPSVLTELRSGLDQTIHYFNAVQSYKSKVDSATSILEALAEELNKN 336

Query: 388 AVQHRETMGHESALFLSYFQTPL 456
            + ++    HE+A  L   QT L
Sbjct: 337 QLTNQR---HEAAHELMRAQTGL 356


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 254 YGRPRTVATIYHGISTTGSVGSRRKTSQEPP 346
           +G+P  VA  +  I T+ + GS+    Q PP
Sbjct: 259 FGKPFIVAAPFSSIDTSLASGSQITIEQRPP 289


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 341 PPQSSPLAWTTSSGAPRSSTERP 409
           PP S P +   SS   RSS +RP
Sbjct: 98  PPSSDPFSSPLSSSLHRSSPKRP 120


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 244  YIILRTTSDSRNNLSWDIHYWIGRE 318
            +++ R  +   NN SW   +W GR+
Sbjct: 1662 FLLPREVASGENNYSWWDGHWFGRK 1686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,361
Number of Sequences: 5004
Number of extensions: 56510
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)