Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327B07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23647-3|AAK67242.2| 183|Caenorhabditis elegans Hypothetical pr... 63 1e-10
U50191-9|AAK31558.1| 139|Caenorhabditis elegans Hypothetical pr... 42 2e-04
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical pr... 29 2.0
AL132904-12|CAC35845.1| 236|Caenorhabditis elegans Hypothetical... 29 2.7
Z75548-1|CAA99911.1| 776|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z35663-16|CAA84726.2| 462|Caenorhabditis elegans Hypothetical p... 28 4.7
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 27 6.2
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 27 6.2
Z81525-5|CAB54242.1| 168|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81128-7|CAB03400.1| 898|Caenorhabditis elegans Hypothetical pr... 27 8.1
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 27 8.1
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 27 8.1
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 27 8.1
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 27 8.1
>L23647-3|AAK67242.2| 183|Caenorhabditis elegans Hypothetical
protein ZC262.8 protein.
Length = 183
Score = 63.3 bits (147), Expect = 1e-10
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Frame = +1
Query: 223 CYMCALGLDVKHT--DVLILSQFVRSDGCMLPKRITGLCKRQQKKIGKMVSMAQKAGLMI 396
C +C + +K T DVLIL QF+R DG +LP+++TGLCK+QQ ++ + V A +GL
Sbjct: 68 CSLCTCNVPIKLTYKDVLILEQFMRDDGTVLPRQLTGLCKKQQLRMERCVMQAFWSGLF- 126
Query: 397 NLTPSNSXKDPTKRKEYKKFNTYF-DETTIFK 489
+ R YK+FN Y+ D+ ++++
Sbjct: 127 ----GDKYGTEADRAGYKRFNRYWKDDMSMYQ 154
>U50191-9|AAK31558.1| 139|Caenorhabditis elegans Hypothetical
protein T14B4.2 protein.
Length = 139
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/66 (28%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +1
Query: 202 PSSEKP-PCYMCALGLDVKHTDVLILSQFVRS-DGCMLPKRITGLCKRQQKKIGKMVSMA 375
P +++P ++C+ G+++ + + +L QFV + G + + ITGLC +KK+ + ++ +
Sbjct: 46 PYTKEPRKSFLCSTGVELDYKNSRLLQQFVSTFSGRVYDRHITGLCDENKKKLIEAIAKS 105
Query: 376 QKAGLM 393
++AG M
Sbjct: 106 RRAGFM 111
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 29.5 bits (63), Expect = 1.5
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = +1
Query: 7 PILSTTTRVISTTNQLN-IKEIRERTEGTNLVIEGVTLPSPRTELLV-RPPNVTPPLPNI 180
P S+TT+ +S +N ++++ + G+ + + P P T+ RPP + PP P
Sbjct: 1458 PPSSSTTKTLSKWRTVNRYTDVQQFSRGSPI---RTSSPVPSTQTTPSRPPQMPPPPPAS 1514
Query: 181 DLSLTKLPSSEKPPCYMCALGLDVKHTDVLILSQFVRSDGCMLPKRI 321
++ PSS P + + + D+LI F+ +PKRI
Sbjct: 1515 GKTIPPPPSSSTP---LVEKLTEDEIQDILICCVFILQ---RMPKRI 1555
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 29.5 bits (63), Expect = 1.5
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = +1
Query: 7 PILSTTTRVISTTNQLN-IKEIRERTEGTNLVIEGVTLPSPRTELLV-RPPNVTPPLPNI 180
P S+TT+ +S +N ++++ + G+ + + P P T+ RPP + PP P
Sbjct: 1458 PPSSSTTKTLSKWRTVNRYTDVQQFSRGSPI---RTSSPVPSTQTTPSRPPQMPPPPPAS 1514
Query: 181 DLSLTKLPSSEKPPCYMCALGLDVKHTDVLILSQFVRSDGCMLPKRI 321
++ PSS P + + + D+LI F+ +PKRI
Sbjct: 1515 GKTIPPPPSSSTP---LVEKLTEDEIQDILICCVFILQ---RMPKRI 1555
>Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical
protein C10C6.3 protein.
Length = 319
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 79 TEGTNLVIEGVTLPSPRTELLVRPPNVTP 165
T+G L ++G T P+P+ L P + TP
Sbjct: 257 TDGNELSLKGATAPTPQKAKLTTPTSTTP 285
>AL132904-12|CAC35845.1| 236|Caenorhabditis elegans Hypothetical
protein Y111B2A.16 protein.
Length = 236
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 142 VRPPNVTPPLPNIDLSLTKLPSSEKPPCYMCALGLDVKHTDVLILSQFVRSDG 300
VRPP P P T + SS+ PP + + L V V + + ++SDG
Sbjct: 7 VRPPMKRGPKPQSFFDDTPVASSDDPPDFESHIVLRVPEDCVGRIEKIIQSDG 59
>Z75548-1|CAA99911.1| 776|Caenorhabditis elegans Hypothetical
protein R90.1 protein.
Length = 776
Score = 28.3 bits (60), Expect = 3.5
Identities = 23/76 (30%), Positives = 33/76 (43%)
Frame = +1
Query: 22 TTRVISTTNQLNIKEIRERTEGTNLVIEGVTLPSPRTELLVRPPNVTPPLPNIDLSLTKL 201
T R+ +T N E RER + V + R EL PP+V P+ S+
Sbjct: 669 TQRISATFNAFESPEERERRRERRMRRRSVE-SNGRVELETPPPSVRSPVVVNKSSVVHA 727
Query: 202 PSSEKPPCYMCALGLD 249
P+S PP + G+D
Sbjct: 728 PAS-SPPVKIRDNGID 742
>Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical
protein F35E2.5 protein.
Length = 575
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +1
Query: 4 KPILSTT--TRVISTTNQLNIKEIRERTEGTNLVIEGVTLPSPRTELLVRPPNVTPPLPN 177
KPI ST+ T + S+ N T N + + PS + ++PP V+P +P
Sbjct: 462 KPIASTSLPTDIPSSLVSENSTTSAATTLSENSTVMFIDQPSSISSENIQPPEVSPVIPQ 521
Query: 178 IDLSLTKLPSSEK 216
+ L+ P ++
Sbjct: 522 RTVYLSSTPMPDE 534
>Z35663-16|CAA84726.2| 462|Caenorhabditis elegans Hypothetical
protein T04A8.3 protein.
Length = 462
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 429 WIFXRVRWS*VDHKTCFLRHR 367
W F ++RW + ++ FLRHR
Sbjct: 23 WSFQQIRWKVTNARSSFLRHR 43
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = -1
Query: 269 STSVCFTSNPNAHI*HGGFSEDGSLVNERSIFGSGGVTFGGLTSSSVRGEGSVTPSITRF 90
S+S CF + P + G F S + + FG +T SS G GS T+
Sbjct: 304 SSSSCFAAKPTSTSAGGSFGNQPSSFSSKPSFGGAFGASTSVTGSSSMG-GSFGNKSTK- 361
Query: 89 VPSVRS 72
VP V S
Sbjct: 362 VPDVES 367
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = +1
Query: 4 KPILSTTTRVISTTNQLNIKEIRERTEGTNLVIEGVTLPSPRTELLVRPPNVTPPLPNID 183
+P S+TT V +TT E + ++ T+ +P T P + T P+
Sbjct: 455 EPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTT 514
Query: 184 LSLTKLPSSEKP 219
+ + S+E P
Sbjct: 515 TTAPETTSTESP 526
>Z81525-5|CAB54242.1| 168|Caenorhabditis elegans Hypothetical
protein F33A8.7 protein.
Length = 168
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +1
Query: 316 RITGLCKRQQKKIGKMVSMAQKAGLMINLTPSNSXKDPTKRKEYKKFNTYFDETTIFKK 492
++ G+ +RQ +K + + AQK P + + +EY+KF+ +F+ T+ KK
Sbjct: 116 KVLGVHRRQARKGAQSDAAAQK--------PEDLVEFQISEREYEKFSKFFNNRTMRKK 166
>Z81128-7|CAB03400.1| 898|Caenorhabditis elegans Hypothetical
protein T23D8.7 protein.
Length = 898
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 10 ILSTTTRVISTTNQLNIKEIRERTEGTNLVIEGVTLPSPRTELLVRPPNV 159
++S R + N +N + + E L IEG LP PR LL R PN+
Sbjct: 434 VMSLQNR-LKMDNDVNAVKFGLKVEAQLLKIEGRVLPVPR--LLYRSPNL 480
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 118 PSPRTELLVRPPNVTPPLPNIDLSLTKLP 204
P P ++ PP VTPP P L+ K P
Sbjct: 581 PPPVASVMRMPPPVTPPKPCTPLTSKKAP 609
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 118 PSPRTELLVRPPNVTPPLPNIDLSLTKLP 204
P P ++ PP VTPP P L+ K P
Sbjct: 598 PPPVASVMRMPPPVTPPKPCTPLTSKKAP 626
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 118 PSPRTELLVRPPNVTPPLPNIDLSLTKLP 204
P P ++ PP VTPP P L+ K P
Sbjct: 710 PPPVASVMRMPPPVTPPKPCTPLTSKKAP 738
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 27.1 bits (57), Expect = 8.1
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +1
Query: 7 PILSTTTRVISTTNQLNIKEIRERTEGTNLVIE-----GVTLPSPRTELLVRPPNVTPPL 171
P S +T + NQ ++ I +R E + + LP PR + R P PP
Sbjct: 1390 PSTSGSTSSATKENQEQLRVIFDREESHSPTVRLSVPLPPALPPPRGSSVFRAPPPLPPK 1449
Query: 172 PNIDLSLTKLPSSEKP 219
N S + SSE+P
Sbjct: 1450 SNRHNSNSPTLSSEQP 1465
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.133 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,803
Number of Sequences: 27780
Number of extensions: 266729
Number of successful extensions: 906
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -