Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327B07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 118 PSPRTELLVRPPNVTPPLPNIDLSLT 195
           P P  E   +P  ++PPL N D + T
Sbjct: 184 PDPHDETAKKPRVLSPPLNNNDATPT 209


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 338 LLH--KPVMRFGSMQPSDLTN*LRISTSVCF 252
           L+H  K + +   M PSD+    RI   VCF
Sbjct: 386 LIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 416


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 338 LLH--KPVMRFGSMQPSDLTN*LRISTSVCF 252
           L+H  K + +   M PSD+    RI   VCF
Sbjct: 386 LIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 416


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 338 LLH--KPVMRFGSMQPSDLTN*LRISTSVCF 252
           L+H  K + +   M PSD+    RI   VCF
Sbjct: 324 LIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,563
Number of Sequences: 438
Number of extensions: 3380
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)