Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327B03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.47 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.47 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.62 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.3  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   7.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 155 VQHL*YVPRMDLHQRLFDRLKKNTRPFYKDLKQRLI 48
           VQ+  Y+P+  + + LFD       PF KD+ + +I
Sbjct: 328 VQYFGYLPQDMVGRSLFDFYHPEDLPFIKDIYETVI 363



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 301 SKRCSVGCSYRSSKWSCNRGYGRSE 375
           S  CS   S RSS  S +R   RSE
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSE 42


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 155 VQHL*YVPRMDLHQRLFDRLKKNTRPFYKDLKQRLI 48
           VQ+  Y+P+  + + LFD       PF KD+ + +I
Sbjct: 34  VQYFGYLPQDMVGRSLFDFYHPEDLPFIKDIYETVI 69


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 268 WGSKRCRTYWSSKRC 312
           WGS  C  YW++K C
Sbjct: 98  WGS--CNNYWNTKNC 110


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 253 CCFAILCWCCSN 218
           CC    CWCC N
Sbjct: 11  CC----CWCCDN 18


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 253 CCFAILCWCCSNPA 212
           CC+  +CW  + PA
Sbjct: 488 CCWWKICWTITTPA 501


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 253 CCFAILCWCCSNPA 212
           CC+  +CW  + PA
Sbjct: 541 CCWWKICWTITTPA 554


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 477 HVGYAQAIPQNIPPYA 430
           H+G +   PQ IPP A
Sbjct: 152 HIGPSTPFPQFIPPNA 167


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 301 SKRCSVGCSYRSSKWSCNRGYGRSE 375
           S  CS   S RSS  S +R   RSE
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSE 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,473
Number of Sequences: 438
Number of extensions: 2525
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)