Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327B02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    27   2.2  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    25   6.8  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    25   9.0  

>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 178 RWIRHAHRSHELLQENVPDLKXFRFAHLILMVAL*NSINRNF 303
           RW +  +R+H LL  N   +K ++     L V   N+++ +F
Sbjct: 96  RWCKRTNRAHFLLSTNDKTIKLWKLYEKNLKVVAENNLSDSF 137


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 139 HLLALHLIRQCTHRWI-RHAHRSH 207
           H L+ +++R  T RW+ RH++  H
Sbjct: 7   HFLSYNILRYSTKRWMNRHSYSHH 30


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 162 DQMEREEVVRWANSLARARVTRWGGMISTP 73
           D+MERE  + W  +LA+ +     G I TP
Sbjct: 126 DRMERESFLNWRRNLAQLQDVE--GFIVTP 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,637
Number of Sequences: 5004
Number of extensions: 31115
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)