Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327B02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0636 + 30761733-30762359                                         29   2.3  
12_01_0444 - 3502460-3502522,3502737-3502741,3502987-3503051,350...    28   4.0  
01_07_0103 + 41098987-41099295                                         28   4.0  
02_03_0218 + 16526082-16526375,16526606-16526725,16528078-165282...    27   6.9  
02_01_0772 - 5755371-5756654,5757808-5757834                           27   6.9  

>01_06_0636 + 30761733-30762359
          Length = 208

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -3

Query: 261 EMRKSKXF*IRNIFLKEFMRAMRVSNPTMRALADQ-MEREEVVRWANSLARARVTRWGGM 85
           ++R      + N+    ++ A  +  P +R+   Q + RE +  WA      RV+ W   
Sbjct: 120 KLRSHHGLEVENVVDLRYLAAQTIGKPALRSAGLQGLVREVMGVWAPKPYHVRVSAWDSW 179

Query: 84  ISTPDDV 64
             TP+ V
Sbjct: 180 NLTPEQV 186


>12_01_0444 -
           3502460-3502522,3502737-3502741,3502987-3503051,
           3503301-3503369,3503487-3503579,3503667-3503770,
           3503926-3504006,3504096-3504167,3504227-3504231,
           3505788-3505865,3506849-3506978,3507216-3507406,
           3507528-3507588,3507916-3508025,3508155-3508239
          Length = 403

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 160 IRQCTHRWIR--HAHRSHELLQENVPDLKXFRFAHLI 264
           IR C  + ++  HAH   E L   +P+++  R AH +
Sbjct: 253 IRSCCDKSLQMLHAHYGWETLDVTIPEIEEMRLAHYV 289


>01_07_0103 + 41098987-41099295
          Length = 102

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 168 LADQMEREEVV--RWA-NSLARARVTRWGGMISTPDDVKKQAL 49
           + DQ++  E+V  RW      RAR  RWGG + +   +++Q L
Sbjct: 19  IGDQIQALEMVLPRWRLRRQRRARRWRWGGCVGSASGLRRQLL 61


>02_03_0218 +
           16526082-16526375,16526606-16526725,16528078-16528238,
           16528601-16528634,16529296-16529398,16529784-16529963,
           16530726-16530742
          Length = 302

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 179 RCVHWRIRWSARR--WCAGPTHWPGRGSPGGVA 87
           RCV+ + RW+ RR  +  G T W  R +P   A
Sbjct: 3   RCVYTQRRWAHRRGGFVTGGTGWSQRRAPAAAA 35


>02_01_0772 - 5755371-5756654,5757808-5757834
          Length = 436

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 197 CACRIQRCVHWRIRWSARRW 138
           C  R+ R  HW++R   RRW
Sbjct: 88  CLIRVPRGDHWKLRLVCRRW 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,662,052
Number of Sequences: 37544
Number of extensions: 186816
Number of successful extensions: 463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)