Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327A12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    28   0.97 
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    27   1.7  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   3.9  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    25   6.8  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    25   9.0  

>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 226 NSAGAMIAICDVKEYRSAVCGRGSRAAPAPAHGLFDALHAL 348
           NS G+   I D+  Y  ++   GSR   A  H L ++ H++
Sbjct: 529 NSLGSSNEIFDIDTYNHSIDNSGSRFTEAVKHNLGNSSHSI 569


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 398 PSQT*CRFSGLTSSRLQSACRASNSP 321
           PS   C+ S LTSS   S C+ S  P
Sbjct: 40  PSGVSCQLSSLTSSNFASGCKISAMP 65


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 21/79 (26%), Positives = 32/79 (40%)
 Frame = +1

Query: 94  VSYLNSVMDKIHDGLEDDNRNSISLELAVRLHRVIYEHLHNFQFNSAGAMIAICDVKEYR 273
           VSY+   M+KIHD L + N      E   +L  V  + L     +S    + I +     
Sbjct: 131 VSYMEIYMEKIHDLLSEKNDRLTVHE--DKLQGVYVQGLKTIYVSSETEALDILNKGMGS 188

Query: 274 SAVCGRGSRAAPAPAHGLF 330
            AV      A  + +H +F
Sbjct: 189 RAVASTSMNAQSSRSHSIF 207


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 352 NLLLVKPENLHQVCEGETLAEF 417
           N++ +KPEN+ ++ E  T AEF
Sbjct: 212 NIVDIKPENMEELTEVITSAEF 233


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 144 ILQTIVYFIHYRIQIG 97
           +L T+ YFI+Y I++G
Sbjct: 34  LLSTLTYFINYEIEMG 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,571
Number of Sequences: 5004
Number of extensions: 42011
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)