Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327A12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.9  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   2.5  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   2.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   3.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.7  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 156 ISIVILQTIVYFIHYRIQIGH 94
           +S++I   I+YFI++RI   H
Sbjct: 16  LSLLIPALILYFIYFRISRRH 36


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 131 SCILSITEFK*DTTARQAGD 72
           SC+LSI + + D T R +GD
Sbjct: 68  SCLLSIFKQEFDETERASGD 87


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 131 SCILSITEFK*DTTARQAGD 72
           SC+LSI + + D T R +GD
Sbjct: 36  SCLLSIFKQEFDETERASGD 55


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = +1

Query: 226 NSAGAMIAICDVKEYRSAVCGRGSRAAP-APAHGLFDALHALCNLLLVKPENLH---QVC 393
           NS G+  A C      ++  G+    AP  P H L  + H LC++   +    H     C
Sbjct: 69  NSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKH-LCSICGDRASGKHYGVYSC 127

Query: 394 EG 399
           EG
Sbjct: 128 EG 129


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +1

Query: 232 AGAMIAICDVKEYRSAVCGRGSRAAPAPAHGLFDALHALCNLLLVKPENLHQVCEGET 405
           +G +  I   KE    +      A+  P H   +    LCNL+  +  N  Q+ E E+
Sbjct: 416 SGKVDVINAAKELIFQIANELEDASNIPVHATLEKFMILCNLM--RTMNRKQISELES 471


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = +1

Query: 226 NSAGAMIAICDVKEYRSAVCGRGSRAAP-APAHGLFDALHALCNLLLVKPENLH---QVC 393
           NS G+  A C      ++  G+    AP  P H L  + H LC++   +    H     C
Sbjct: 69  NSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKH-LCSICGDRASGKHYGVYSC 127

Query: 394 EG 399
           EG
Sbjct: 128 EG 129


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 132 IVYFIHYRIQIGHH 91
           +V F  +  QIGHH
Sbjct: 189 LVVFFRFERQIGHH 202


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 173 WP*DCTGLYMNTCTTSS 223
           WP D TGL   + T+S+
Sbjct: 93  WPGDATGLSNRSSTSSN 109


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 145 HPPNHRVFYPLPNSNRTPRLGKLVTL*Y 62
           H P H + YP PN    P L  L+ L Y
Sbjct: 32  HIPEHWLVYPEPN----PSLHYLLALLY 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,349
Number of Sequences: 438
Number of extensions: 2987
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)