Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327A11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 34 0.011
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 28 0.97
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 27 1.3
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 27 2.2
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 26 3.0
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 26 3.0
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 3.9
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 26 3.9
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 3.9
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 25 5.2
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 5.2
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 25 6.8
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 25 6.8
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 25 6.8
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 9.0
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 9.0
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 34.3 bits (75), Expect = 0.011
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 242 PIVFTDSKPDLLTKEIIHLNEMETDENDEKEFNDLITKNFMSRIMEVGSPVP 397
P+VF+ KPD ++ L+E E ++ D E + L F +RI+ V P+P
Sbjct: 291 PVVFSTEKPDPRKASLLPLSEEEFEKGDVDELSAL--PEFRARILPVIGPMP 340
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 27.9 bits (59), Expect = 0.97
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 257 DSKPDL--LTKEIIHLNEMETDENDEKEFNDLITKNFMSRIMEVGSPVPKQVYSSG 418
D KP L L + ++HL++ D K N LIT +F +I + G + K ++ +G
Sbjct: 270 DCKPLLKQLLETLLHLHKQGVTHRDIKPENILITNDFHLKISDFG--LAKVIHGTG 323
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 233 LPQPIVFTDSKPDLLTK---EIIHLNEMETDENDEKEFNDLITKNFMSRIME 379
LP + FT DLL + E IHL E +E EKE I + + +E
Sbjct: 25 LPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHIIKALE 76
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +2
Query: 170 NVIIPKYMIPHYIKYVDKPGFLPQPIVFTDSKPDLLTKEIIHLNEMETDENDEKEFNDLI 349
++I Y + + K V K FL P T K L+ K++ H NE +E N+LI
Sbjct: 189 DIIHEIYNVGSHFKEVTK--FL-WPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELI 245
Query: 350 TK 355
K
Sbjct: 246 KK 247
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 3.0
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +2
Query: 158 NYFRNVIIPKYMIPH--YIKYVDKPGFLPQPIV-----FTDSKPDLLTKEIIHLNEMETD 316
NYFRNV+ YI++++ Q +V + DS +LL+ EII ++
Sbjct: 330 NYFRNVLYQTERSKSLGYIRHIEHLQVFRQAMVNYYRLYEDSLSELLSGEIITEATLKIV 389
Query: 317 ENDEKEFNDLITK 355
++ K+F +L K
Sbjct: 390 KDRRKKFLELCVK 402
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 245 IVFTDSKPDLLTKEII--HLNEMETDENDEKEFNDLI 349
+ F S D T E++ HL+ ++ DE++ K FN+++
Sbjct: 132 LAFLISDTDDNTLEVLKQHLDAIQNDEDESKHFNNVL 168
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +3
Query: 195 FPTTLNTSINLDFCRNQSYSQIRNQ 269
+ T + TS+ LDFC++ +++ I+++
Sbjct: 79 YHTHILTSVRLDFCKSHAHTYIKSK 103
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +2
Query: 2 IRHEAKMHAVTTVLVAAIGICAIAKSPGATTAPTMPQTMNSGEEDKQIPSP 154
I H+AK+ A+T L I K+ AP E+ K P P
Sbjct: 192 IYHQAKLDAITEPLKFIDQPLPIIKAENKEAAPAKKAEKKKDEKKKNAPKP 242
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 61 MCYRQIPRGYNSADNATNYELR 126
+CYR P Y SA+N T YEL+
Sbjct: 1090 ICYRGSP-DYISAENYTRYELK 1110
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 436 NKPETC*HTRPTFRHKL 486
+KP C H RPT RH L
Sbjct: 773 SKPWNCPHGRPTMRHLL 789
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +2
Query: 68 IAKSPGATTAPTMPQTMNSGEEDKQIPSPMNY 163
+AK P + A T P+ + + +IP P+ +
Sbjct: 617 VAKQPTSNVALTRPKPVRTATSQSKIPKPVKH 648
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 143 IPSPMNYFRNVIIPKYMIPHYIKYVDKPGFLPQPIVFTDSKPDLLTKEIIHLNEMETDE 319
+ S +N +++ I+ MI +KY+DK V + + +E++ LN E E
Sbjct: 122 LSSLVNSWKDHIVSMQMISSVLKYLDKVYSKSADKVPVNENGIYIFREVVLLNSFEIGE 180
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 245 IVFTDSKPDLLTKEIIHLNEMETDENDEKEFNDLITKNFMSRIMEVGSPVPKQ 403
IV D KP L + I + E + EKE ND + S + + P KQ
Sbjct: 278 IVPIDPKPILRAQAIPRRIQPEEQADYEKELNDHVNIVKSSTYIPISIPTQKQ 330
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.0 bits (52), Expect = 6.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 158 NYFRNVIIPKYMIPHYIK 211
NY +N++IP+ ++ H K
Sbjct: 4 NYLKNLVIPRLIVKHQFK 21
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 350 TKNFMSRIMEVGSPVPKQVYSSGGS--NKAEINLKHANIPAPHSDI 481
TK+ S +++ P+++ + S N+ + NLK + +P SDI
Sbjct: 475 TKSSASPLVKAPKETPERLCTENQSTENEDQANLKESELPKEKSDI 520
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/66 (22%), Positives = 26/66 (39%)
Frame = +2
Query: 2 IRHEAKMHAVTTVLVAAIGICAIAKSPGATTAPTMPQTMNSGEEDKQIPSPMNYFRNVII 181
I ++ M V TV + + + ATT + +++ PSP N +
Sbjct: 1012 INGDSNMDNVATVDKSTDAVDTSTATVAATTTTAEEELPQKESQERSSPSPENQDSTPLA 1071
Query: 182 PKYMIP 199
PK + P
Sbjct: 1072 PKSVSP 1077
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 9.0
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 98 PTMPQTMNSGEEDKQIPSPMNYFRNVIIPKYM-IPHYIKYVDKPGFLPQPIVFTDSKPDL 274
PT+PQ ++ EE+ QI ++ N+ + + + I HY ++ + K D
Sbjct: 312 PTIPQELDLVEEEDQITHYISLDDNLDVQESLGIFHYDPDYEE----------NEKKYDA 361
Query: 275 LTKEIIHLNEMETDENDEKE 334
+ EI L E + DEN+E E
Sbjct: 362 IKHEI--LGEEDDDENEEDE 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,932
Number of Sequences: 5004
Number of extensions: 50445
Number of successful extensions: 194
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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