Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327A10f
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    27   1.3  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    27   1.3  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    26   2.2  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    26   2.9  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   5.1  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   6.7  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    25   6.7  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   6.7  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    24   8.9  

>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 422 IWGFSSSFFFNFITDLINF 366
           +WGF  SFF  FIT+ I F
Sbjct: 413 LWGFLISFFTPFITNSIGF 431


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 106 PKNEDASEEAKKIVDDAKNF 165
           P  ++A EEAK I ++AKNF
Sbjct: 154 PITQEAVEEAKPITEEAKNF 173


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 422 IWGFSSSFFFNFITDLINF 366
           +WGF  +FF  FI+D I F
Sbjct: 413 LWGFLITFFTPFISDSIGF 431


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 330 FLACNV*KNDSTSKSNSCYFXNLHRYKTSY 241
           +L  NV +ND + K NS       R+K+SY
Sbjct: 322 YLGLNVVQNDDSRKKNSTLQTQNMRFKSSY 351


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 100 AKPKNEDASEEAKKIVDD-AKNFIERAIAD 186
           +KP NED  E+ K I +D +K   E++ +D
Sbjct: 227 SKPSNEDNVEDKKDITNDSSKETAEKSSSD 256


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 337 IDINWDK*TKKLIRSVIKLKKKLL 408
           +++ W+  TKK IRSV+ L   LL
Sbjct: 49  VELPWEFTTKKPIRSVVPLNVMLL 72


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 422 IWGFSSSFFFNFITDLINF 366
           +W F  SFF  FIT+ I F
Sbjct: 413 LWNFLISFFTPFITNSIGF 431


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 432 FQTNLGIFQ*LLFQFYH*SYQLFCLFIPININVAFLAC--NV*KNDSTSKSNSCYFXNLH 259
           F T+LGI   L+ + YH S Q    F+  N+     +C   + K+D+ +K   C     H
Sbjct: 289 FATSLGIDSSLILEVYHNSLQT-KEFVAKNLTGGHASCFSVLLKSDTVAKHLCCELKYFH 347


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 237 MDNWFYIYEDXKSSSCWTWRWSHSFTH 317
           +  WF+ Y D KSS+  T   SH F H
Sbjct: 365 VSQWFF-YRDTKSSATKTNLVSHFFYH 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,637
Number of Sequences: 5004
Number of extensions: 24822
Number of successful extensions: 83
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)