Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327A10f
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   4.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   4.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.9  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 6/26 (23%), Positives = 13/26 (50%)
 Frame = +3

Query: 228 CIRMDNWFYIYEDXKSSSCWTWRWSH 305
           C + + + Y+Y++     C   +W H
Sbjct: 560 CDQCEEYEYVYDEYTCMDCGPGKWPH 585


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 278 QLLDLEVESFFYTLQ 322
           QL  +E+ESF YT++
Sbjct: 150 QLCHIEIESFGYTMR 164


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 278 QLLDLEVESFFYTLQ 322
           QL  +E+ESF YT++
Sbjct: 150 QLCHIEIESFGYTMR 164


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 278 QLLDLEVESFFYTLQ 322
           QL  +E+ESF YT++
Sbjct: 89  QLCHIEIESFGYTMR 103


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 5/26 (19%), Positives = 13/26 (50%)
 Frame = +3

Query: 228 CIRMDNWFYIYEDXKSSSCWTWRWSH 305
           C + + + Y++++     C   +W H
Sbjct: 470 CDQCEEYEYVHDEYTCMDCGPGKWPH 495


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 192 TNICNGSFDKVFSVVYNFF 136
           T++C+ S  ++F  + NFF
Sbjct: 27  TDVCSASNGELFLALLNFF 45


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 396 KEATGKSPDW 425
           ++A G+SPDW
Sbjct: 581 QQAPGQSPDW 590


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 419 WGFSSSFFFNFITDLINFF 363
           W F  + F++ I D+I ++
Sbjct: 468 WAFGVNRFYDGIRDMIGYY 486


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 419 WGFSSSFFFNFITDLINFF 363
           W F  + F++ I D+I ++
Sbjct: 521 WAFGVNRFYDGIRDMIGYY 539


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,706
Number of Sequences: 438
Number of extensions: 1561
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)