Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327A08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71177-8|CAA94866.2|  525|Caenorhabditis elegans Hypothetical pr...    31   0.50 
U97009-9|AAC69027.1|  225|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z71177-8|CAA94866.2|  525|Caenorhabditis elegans Hypothetical
           protein AC3.2 protein.
          Length = 525

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -1

Query: 182 QKLHIGDFKFATTIYYNNYNRMKTT*LNIIYKASMTFIYIYIYICRSKRTRSHCKHSYK 6
           ++LH+   +  T IYYN    +    L +       FIY + ++C  KR++S+ K S K
Sbjct: 467 EELHVEGSRLNTIIYYNL--DVIAFVLFVFVAVLHVFIYAFKFLCCKKRSQSNIKKSKK 523


>U97009-9|AAC69027.1|  225|Caenorhabditis elegans Hypothetical
           protein T19H12.2 protein.
          Length = 225

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 405 RCKFKISNVTFRGH-VSVSHVCILSQYLNLLRVNLTKNLSIGL 280
           +C  +I  +T  G+ +++ +V  L    NL+ ++L+ N S+GL
Sbjct: 83  KCAPEIKKITLSGNRLTLDNVRTLKMLPNLMELDLSNNSSLGL 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,988,847
Number of Sequences: 27780
Number of extensions: 169279
Number of successful extensions: 411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)