Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327A07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   103   1e-23
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   0.73 
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    28   0.97 
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   3.0  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   6.8  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   6.8  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   6.8  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.0  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  103 bits (248), Expect = 1e-23
 Identities = 48/87 (55%), Positives = 64/87 (73%)
 Frame = +3

Query: 261 KHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLD 440
           +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V++AILED+VFP EI+GKR R   D
Sbjct: 90  RHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATD 147

Query: 441 GSQLIKVHLDKNQQTTIEHXVDTFQSV 521
           G + IKV LD     T+++ + +F SV
Sbjct: 148 GRKTIKVFLDNRDANTVDYKLGSFSSV 174



 Score = 75.4 bits (177), Expect = 5e-15
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
 Frame = +2

Query: 17  IIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVPM 190
           I+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP 
Sbjct: 7   IVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQ 66

Query: 191 PKLKAFQKIQIRLVRELEKKF 253
           P LKAF K Q RL RELEKKF
Sbjct: 67  PLLKAFHKCQARLTRELEKKF 87


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +3

Query: 264  HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 443
            H V V D+ +   P       N+Q   R  +L+ + D + +  V   E V  R   K  G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650

Query: 444  SQLIKVHLD-KNQQTTIEH 497
            S ++   LD K+ Q   EH
Sbjct: 1651 SYILNPSLDLKHTQEMFEH 1669


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 351 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTF 512
           ++L + YD + EDL   ++ +GK+  ++   ++L  VHL  +   TIE  +  F
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKF 615


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 335 KEATLKDIDLCVRCYPRGLGLPC 403
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 353 P*AWPLLFVSNTSFVAGLRQDLTVSN 276
           P A  +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 297 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 422
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 484 VCWFLSKCTLMSCEPSNLTLMR 419
           +C FL K T  SC   NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 11  RGIIKASGAEADSFETSISQALVELETN 94
           + I  +SG+E  +F+T+ISQ   E++T+
Sbjct: 30  KSISPSSGSELPNFKTTISQNNEEVKTS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,044
Number of Sequences: 5004
Number of extensions: 39243
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)