Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327A05f
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0125 + 31850858-31850905,31851032-31851109,31851221-318513...    27   6.2  
04_03_0078 - 10740091-10740154,10740378-10740469,10740624-107408...    27   8.2  

>03_06_0125 +
           31850858-31850905,31851032-31851109,31851221-31851337,
           31851346-31851642,31852498-31852509,31852737-31852822,
           31853516-31853660,31853767-31853862,31854333-31854424,
           31854696-31854797,31854891-31855037,31855116-31855266,
           31855418-31855480,31855570-31855806,31856081-31856185,
           31856263-31856376,31856459-31857037,31857279-31857286,
           31857858-31858004,31858077-31858203
          Length = 916

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 79  TAAEIKPCSVEIQTTIYNGADSRYENKTPRDHTKYQSICVPKSFQFVA 222
           T +E  PCS E  T+     DS  + K    H ++   CV      VA
Sbjct: 797 TESERTPCSKEYPTSYSRNGDSLVQIKDSWTHGRWAQACVVHGLLVVA 844


>04_03_0078 -
           10740091-10740154,10740378-10740469,10740624-10740889,
           10741010-10741118
          Length = 176

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 196 VPKSFQFVAILHSFFLSFYIXIYLIKFFMLPLN 294
           VP+ F   A+L+SF +S  + +   K  M+PLN
Sbjct: 58  VPQLFALKALLNSFAISSGLKVNYSKSCMIPLN 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,260,755
Number of Sequences: 37544
Number of extensions: 141852
Number of successful extensions: 283
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)