Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327A04f
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   164   6e-42
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   163   1e-41
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   1.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.2  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   6.6  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  164 bits (399), Expect = 6e-42
 Identities = 74/128 (57%), Positives = 95/128 (74%)
 Frame = -1

Query: 503 IRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLL 324
           I  M L++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ RWP KS +F   LL
Sbjct: 36  INGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLL 95

Query: 323 RNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSERED 144
           +NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+SSP HIE+ ++E E+
Sbjct: 96  KNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEE 155

Query: 143 AVXRVAPT 120
           AV +   T
Sbjct: 156 AVPKANDT 163


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  163 bits (397), Expect = 1e-41
 Identities = 74/128 (57%), Positives = 94/128 (73%)
 Frame = -1

Query: 503 IRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLL 324
           I  M L++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ RWP KS  F   LL
Sbjct: 36  INGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLL 95

Query: 323 RNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSERED 144
           +NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+SSP HIE+ ++E E+
Sbjct: 96  KNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEE 155

Query: 143 AVXRVAPT 120
           AV +   T
Sbjct: 156 AVPKANDT 163


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 285 RGQASHRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 160
           + Q+     S K RA   +T +  ++S   HQ +H +S PH S S
Sbjct: 331 QAQSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 371 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 454
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 195 LH-VVSLPHRSMSQRTRRCCRQGSPY**CPSEEKAFQEKACASKGEDDE 52
           LH ++ LP RS S  T +C  +       P   K  +E   +SKG+D+E
Sbjct: 182 LHSIIKLPDRS-SSFTLQCINESVR----PQSTKVKEEATTSSKGKDEE 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,002
Number of Sequences: 5004
Number of extensions: 34168
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)