Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327A04f
(509 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 177 4e-45
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 174 4e-44
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 30 1.2
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 29 2.2
06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580... 27 6.6
12_01_0321 + 2447726-2447790,2448114-2448320,2449259-2449392,244... 27 8.8
09_02_0608 + 11194889-11195134,11195185-11195406 27 8.8
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 177 bits (431), Expect = 4e-45
Identities = 86/134 (64%), Positives = 103/134 (76%), Gaps = 1/134 (0%)
Frame = -1
Query: 506 AIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQ 330
A+RK+PL +A RYL++VI K+ IPFRR+ GGVGR AQ K + QGRWP KSA F+L
Sbjct: 47 ALRKLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILD 106
Query: 329 LLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSER 150
LL+NAESNAD K LDVD L + HIQVN+A RRRTYRAHGRINPYMSSPCH+E+ LSE+
Sbjct: 107 LLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVELILSEK 166
Query: 149 EDAVXRVAPTDDAP 108
E+AV + T AP
Sbjct: 167 EEAVKKEPETTIAP 180
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 174 bits (423), Expect = 4e-44
Identities = 84/126 (66%), Positives = 100/126 (79%), Gaps = 1/126 (0%)
Frame = -1
Query: 506 AIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQ 330
AIRK+PL +A RYL++VI K+ IPFRR+ GGVGR AQAK + QGRWP KSA F+L
Sbjct: 35 AIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILD 94
Query: 329 LLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSER 150
LL+NAESNA+ K LDVD L + HIQVN+A RRRTYRAHGRINPYMSSPCHIE+ LSE+
Sbjct: 95 LLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEK 154
Query: 149 EDAVXR 132
E+ V +
Sbjct: 155 EEPVKK 160
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -1
Query: 428 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQ 255
R +G V RC R K EF Q+ + +E S + + L + + I H+
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068
Query: 254 VNRAPCLR 231
+ APCLR
Sbjct: 1069 GSSAPCLR 1076
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 29.1 bits (62), Expect = 2.2
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = -1
Query: 467 LKNVIEKKECIPFRRFNGGVGRCAQAKQ--FGTTQGRWPKKSAEFLLQLLRNAESNAD-- 300
L N++E E R GR A+ Q + RWP ++AE RN E NA+
Sbjct: 400 LDNMVEMHETQVDNRLQDEAGRDARFWQPSLDDSLDRWPNETAE---DAERNWEDNAEEL 456
Query: 299 -NKTLDVDRLVIDHIQ 255
++T++ D DH+Q
Sbjct: 457 HSETMEDDAREHDHLQ 472
>06_01_0776 -
5805555-5805639,5805769-5806008,5806103-5806173,
5806274-5806627
Length = 249
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 114 CPSEEKAFQEKACASKGEDDE 52
C EE+A EK C GED +
Sbjct: 108 CSGEEEAMAEKVCTQAGEDHD 128
>12_01_0321 +
2447726-2447790,2448114-2448320,2449259-2449392,
2449481-2449668,2450204-2450359
Length = 249
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 261 HSGKSRALPTQT-YIPCSRSHQPLHVVSLPHRSMSQ 157
HSG R+ P+ T P P HV S PHR Q
Sbjct: 8 HSGLPRSPPSATGRQPYEAQFGPFHVPSRPHRGPDQ 43
>09_02_0608 + 11194889-11195134,11195185-11195406
Length = 155
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 247 ARPAYADVHTVLTVASTPTCRLPATS 170
AR A +D+ T+L + + P RLP TS
Sbjct: 24 ARRALSDLQTILGLGAAPPQRLPQTS 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,991,250
Number of Sequences: 37544
Number of extensions: 256698
Number of successful extensions: 762
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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