Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327A02f
(497 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203... 35 0.032
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 33 0.17
05_01_0103 + 686770-687017,687120-687270 32 0.29
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318 31 0.39
03_06_0479 + 34217170-34217172,34217337-34217786 31 0.39
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874... 30 1.2
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 30 1.2
03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477... 29 1.6
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779... 29 2.1
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 29 2.7
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 28 3.6
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237 27 6.3
01_06_1522 - 37962431-37963060,37963216-37963542 27 6.3
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 27 8.4
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 27 8.4
08_02_0955 + 22994266-22995630 27 8.4
02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791... 27 8.4
02_01_0695 - 5202091-5202498,5204103-5204588 27 8.4
>03_06_0480 +
34218403-34218405,34219071-34219127,34220047-34220312,
34220402-34220552
Length = 158
Score = 35.1 bits (77), Expect = 0.032
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = -2
Query: 493 AKVKKKMLYSSSFDALKKSXVGVQKXIQAT 404
AKV+ KMLY+SS + KK G+Q +QAT
Sbjct: 114 AKVRSKMLYASSNERFKKELNGIQLEVQAT 143
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 493 AKVKKKMLYSSSFDALKKSXVGVQKXIQAT 404
++V+ KMLY+SS D K+ G+Q +QAT
Sbjct: 114 SRVRSKMLYASSKDRFKRELDGIQVELQAT 143
>05_01_0103 + 686770-687017,687120-687270
Length = 132
Score = 31.9 bits (69), Expect = 0.29
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -2
Query: 493 AKVKKKMLYSSSFDALKKSXVGVQKXIQAT 404
++V+ KM+Y+SS D K+ G+Q +QAT
Sbjct: 88 SRVRSKMIYASSKDRFKRELDGIQVELQAT 117
>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
Length = 145
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 493 AKVKKKMLYSSSFDALKKSXVGVQKXIQAT 404
A+ + KMLY+SS D ++ G+Q IQAT
Sbjct: 101 ARTRSKMLYASSKDRFRRELDGIQCEIQAT 130
>03_06_0479 + 34217170-34217172,34217337-34217786
Length = 150
Score = 31.5 bits (68), Expect = 0.39
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 493 AKVKKKMLYSSSFDALKKSXVGVQKXIQAT 404
A V+ KM+Y+SS + KK GVQ +QAT
Sbjct: 106 ADVRSKMVYASSNEGFKKELDGVQIDLQAT 135
>07_03_0561 +
19485218-19485242,19485323-19486467,19487354-19487476,
19487553-19487626,19487886-19487946,19488285-19488370,
19488795-19488864,19489026-19489122,19489342-19489481,
19490225-19490308,19490313-19490346,19491833-19491951
Length = 685
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 99 AAPPFKPKRITASRQK*AGGGGTYP 173
A PP +PKR+ R+K AGG G P
Sbjct: 82 APPPPQPKRLQGGRKKGAGGHGKLP 106
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 444 KSPXSEFRSXSKRPXLG-SVSGGRRREAPRHRSPINSIYTRA 322
+SP RS S+ P S S GRR +PR RSP Y+R+
Sbjct: 122 RSPRYRGRSRSRSPRYRRSPSYGRRSYSPRDRSPKRRSYSRS 163
>03_06_0174 -
32141956-32141985,32143658-32144452,32147645-32147759,
32148134-32148399,32150193-32150213
Length = 408
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 493 AKVKKKMLYSSSFDALKKSXVGVQKXIQAT 404
++++ KMLYS+S D +K+ G IQAT
Sbjct: 101 SRIRAKMLYSTSKDRIKQELDGFHYEIQAT 130
>08_02_1170 +
24876197-24877070,24877563-24877606,24877805-24877900,
24877999-24878544
Length = 519
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -2
Query: 139 REAVMRFGLKGGAAVVTIWVAHLCCRCL*LPVTT 38
R +++ G+ G A+V++W+ + C + +PV T
Sbjct: 140 RPSLLLLGVTGTTALVSMWIHNTACTVMMMPVAT 173
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 493 AKVKKKMLYSSSFDALKKSXVGVQ 422
+KV+ KMLY+SS D K+ G+Q
Sbjct: 359 SKVRSKMLYASSKDRFKRELDGIQ 382
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -3
Query: 441 SPXSEFRSXSKRPXLGSVSGG--RRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRP 268
+P SE + S R G GG R + R S R RD+ + RH D R
Sbjct: 25 APRSEEKERSSRRRSGGGGGGDEERDDGERRSKRSRSEENRDRDKDKDRDRHRDRDKDRD 84
Query: 267 RH 262
RH
Sbjct: 85 RH 86
>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
Length = 572
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 304 GFGFVASSCVNAVYWRSVARSFSS 375
GFG V VNAV+W S+AR SS
Sbjct: 257 GFGIVFGG-VNAVFWSSLARVSSS 279
>01_06_1522 - 37962431-37963060,37963216-37963542
Length = 318
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 4 MVGRAHSPPGVKWLLEAID 60
+VG+ H PPG +WL E +D
Sbjct: 44 LVGQLHLPPGGRWLDEYMD 62
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 493 AKVKKKMLYSSSFDALKKSXVGVQKXIQAT 404
++++ KMLY++S + ++ GV IQAT
Sbjct: 101 SRIRAKMLYATSKERFRRELDGVHYEIQAT 130
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 378 RRREAPRHRSPINSIYTRARDETEPALRHSCPDD 277
R R A R RSP +R + P+ RH C D
Sbjct: 358 RHRRAMRSRSPSKRRRHGSRGRSPPSSRHGCAKD 391
>08_02_0955 + 22994266-22995630
Length = 454
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 444 KSPXSEFRSXSKRPXLGSVSGGRRREAPRHRSPINSIY-TRARDETEP 304
K P + S S+ + GRRR R RSP S +R+R +T P
Sbjct: 4 KRPAAASGSASEASDCEAGGAGRRRSPSRSRSPSRSASPSRSRSKTPP 51
>02_05_1010 +
33477878-33478446,33478709-33478834,33478905-33479190,
33479293-33479484,33479641-33479870,33480379-33480718,
33481673-33481789,33481940-33482014
Length = 644
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 405 PXLGSVSGGRRRE--APRHRSPINS 337
P G SG RR + RHRSP+NS
Sbjct: 62 PSAGHTSGARRSDNYVRRHRSPLNS 86
>02_01_0695 - 5202091-5202498,5204103-5204588
Length = 297
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 108 PFKPKRITASRQK*AGGGGTYP 173
PF P + A++ K AGGGG P
Sbjct: 203 PFYPTKANAAQSKAAGGGGCRP 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,692
Number of Sequences: 37544
Number of extensions: 316028
Number of successful extensions: 967
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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