Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327A02f
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    28   3.3  
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       28   4.3  
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    28   4.3  
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    28   4.3  
L17337-5|ABM74562.1|  306|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 279 RQGRSVGERVRFRRELVCKCC 341
           R+GR  G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 414 SKRPXLGSVSGGRRREAPRHRSPINSIYTRARDETEPA 301
           S+   L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 683 SQSTTLTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 414 SKRPXLGSVSGGRRREAPRHRSPINSIYTRARDETEPA 301
           S+   L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 683 SQSTTLTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 493 AKVKKKMLYSSSFDALKKSXVGVQKXIQ 410
           A +KKKM+Y+SS  A+K S +G  K +Q
Sbjct: 114 ASIKKKMVYASSAAAIKTS-LGTGKILQ 140


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 493 AKVKKKMLYSSSFDALKKSXVGVQKXIQ 410
           A +KKKM+Y+SS  A+K S +G  K +Q
Sbjct: 114 ASIKKKMVYASSAAAIKTS-LGTGKILQ 140


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 493 AKVKKKMLYSSSFDALKKSXVGVQKXIQ 410
           A +KKKM+Y+SS  A+K S +G  K +Q
Sbjct: 114 ASIKKKMVYASSAAAIKTS-LGTGKILQ 140


>L17337-5|ABM74562.1|  306|Caenorhabditis elegans Hypothetical
           protein ZK686.6 protein.
          Length = 306

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 446 EKVPCRSSEVHPSDRLSEASQEAVEEKLRATDRQ*TAFTHELATKPNPLSD 294
           E +PCR  E+   D L     EA+E+ +R   ++     +EL+T+   L D
Sbjct: 72  ECLPCREGEIMTVDDLVAHVDEAIED-IRIRLKEEEESLNELSTEKKELDD 121


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = -3

Query: 441 SPXSEFRSXSKRPXLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCP 283
           SP  +    S     G  +G RRR  PR  SP      R    + P  R S P
Sbjct: 191 SPGGDGGGGSPAARRGGSAGNRRRSPPRRGSPRRGSPRRDTRRSPPRRRGSPP 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,997,278
Number of Sequences: 27780
Number of extensions: 222903
Number of successful extensions: 546
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)