Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326H12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   3.9  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   5.2  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 336 TIFKRNKFNQIRIETELIKLPIL*IQYTN 250
           T+F RN+F+  R+ +++IK     + Y N
Sbjct: 7   TLFIRNRFSNYRLRSQIIKYKYSNVSYLN 35


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 214  KHFFILQFIALYVRVLNLEYWQFY*LSFYSYLIELVPFEYGTKLLR 351
            KH   ++  ++Y + L  EYW  + LSF   + E    E  +K L+
Sbjct: 1382 KHLKHMKKESVYSKKLEEEYWLPFLLSFNEIICEASDLEVRSKALK 1427


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 331 IQKEQVQSNTNRN*ANKIANTLNSI 257
           ++KE+ +S  NRN  N++ N+L  I
Sbjct: 254 LEKEEKRSRVNRNRINELNNSLGEI 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,267
Number of Sequences: 5004
Number of extensions: 38285
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)