Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326H12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019...    28   5.2  
09_04_0679 - 19398696-19399303,19400425-19400596                       27   6.9  
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    27   6.9  
09_05_0003 + 20016534-20016703,20017679-20017915,20018585-200186...    27   9.1  

>02_02_0574 - 11701359-11701460,11701469-11701570,11701725-11701922,
            11702090-11704052,11705312-11706126
          Length = 1059

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 436  WLIWKPVCFSIPYETSRKLVYRLIV 510
            W  W    +S PY T  K +YR I+
Sbjct: 1028 WAFWTTTGYSFPYSTEEKQLYRGIL 1052


>09_04_0679 - 19398696-19399303,19400425-19400596
          Length = 259

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 169 ISHVYCDKCSALFYKKHFFILQ 234
           +  VYCD CS   + KH F L+
Sbjct: 36  VGSVYCDACSNNTFSKHSFFLK 57


>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
            27850798-27851786,27852119-27852733,27852893-27852921,
            27853990-27854453,27854530-27854654,27854743-27855025,
            27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 178  VYCDKCSALFYKKHF 222
            V C  C ALF+KKHF
Sbjct: 1150 VNCQYCEALFHKKHF 1164


>09_05_0003 +
           20016534-20016703,20017679-20017915,20018585-20018631,
           20018932-20019050,20019128-20019288,20019379-20019488,
           20019571-20019670,20019701-20019743,20020375-20020503
          Length = 371

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 77  PGLRNNNCNSMYGSK---EMRY*QSITIKLNIYIYHTFTATSVALCFIKNIFLF 229
           PGL     ++ +GS    E+   Q  T+ L  YIYHT  A +     +K+IF F
Sbjct: 252 PGLVQRYTSARFGSHSTGELLTEQESTL-LTDYIYHTLAAKASGELCLKHIFSF 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,753,514
Number of Sequences: 37544
Number of extensions: 186104
Number of successful extensions: 340
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)