Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326H12f
(521 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 25 0.62
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 25 0.62
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 24 1.1
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 23 1.4
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 5.8
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 5.8
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 21 5.8
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 21 7.7
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 21 7.7
AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 21 7.7
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.6 bits (51), Expect = 0.62
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = -3
Query: 468 YRKANWFPYKPRNSKDNLK*NYKVVLNLSSKSGLGSVNLS**FCTIFKRNKFNQIRIETE 289
YR+ + + R ++ K +K++ +LS+ + N +C +K+ +N IE
Sbjct: 59 YRETSKERSRDRKEREKSK-EHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQI 117
Query: 288 LIKLPI 271
I +PI
Sbjct: 118 PIPVPI 123
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.6 bits (51), Expect = 0.62
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = -3
Query: 468 YRKANWFPYKPRNSKDNLK*NYKVVLNLSSKSGLGSVNLS**FCTIFKRNKFNQIRIETE 289
YR+ + + R ++ K +K++ +LS+ + N +C +K+ +N IE
Sbjct: 59 YRETSKERSRDRKEREKSK-EHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQI 117
Query: 288 LIKLPI 271
I +PI
Sbjct: 118 PIPVPI 123
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 23.8 bits (49), Expect = 1.1
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 352 ILIILYHIQKEQVQSNTNR-N*ANKIANTLNSIHE 251
+L++ I + + S T R N K+AN++N IHE
Sbjct: 6 LLVVCLGIACQGITSVTVRENSPRKLANSMNVIHE 40
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 1.4
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = -3
Query: 468 YRKANWFPYKPRNSKDNLK*NYKVVLNLSSKSGLGSVNLS**FCTIFKRNKFNQIRIETE 289
YR+ + + R ++ K +K++ +LS+ + N +C +++ +N IE
Sbjct: 59 YRETSKERSRDRKEREKSK-EHKIISSLSNNYNYNNNNYKKLYCNNYRKLYYNINYIEQI 117
Query: 288 LIKLPI 271
I +PI
Sbjct: 118 PIPVPI 123
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 5.8
Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +2
Query: 281 FISSVSIRI*LNLFLLNM-VQNY 346
F+S+ S+R NLF++N+ + N+
Sbjct: 77 FLSTKSLRTPSNLFVINLAISNF 99
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.4 bits (43), Expect = 5.8
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 407 FHFKLSFELRGLYGNQFAFRYHMRLH 484
FH + + + YGN+F+ Y + H
Sbjct: 421 FHVQETDKYDAYYGNRFSGEYEIPAH 446
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 21.4 bits (43), Expect = 5.8
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -3
Query: 201 SATLVAVNV*YI*IFNLMVIDCQYRISLEP 112
S V +NV + ++ ++I+CQ ++ P
Sbjct: 693 SYNCVPINVQFSVLYGFVIIECQEPVTNRP 722
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 21.0 bits (42), Expect = 7.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 337 YHIQKEQVQSNTNRN*ANKIANTLNSIHEHIKR 239
YH Q Q+ N+N N+ AN N+ +++ +
Sbjct: 422 YHNQNAGNQNADNQNADNQNANNQNADNQNANK 454
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 21.0 bits (42), Expect = 7.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 281 FISSVSIRI*LNLFLLNM 334
F+S+ S+R NLF++N+
Sbjct: 43 FLSTKSLRTPSNLFVINL 60
>AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly
protein 8 protein.
Length = 416
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 377 NRGWAVLIYLNNFVPYSKGTSS 312
N G+A++IY N+ + + TSS
Sbjct: 206 NEGFALIIYNNSDNSFQRLTSS 227
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,735
Number of Sequences: 438
Number of extensions: 2716
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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