Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326H05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   1.3  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   5.2  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   9.0  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   9.0  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 437 NRHQHVTTAGNGHQDVTSAGNRH 505
           N H  +TT  NGH  + ++GN H
Sbjct: 303 NTHPFLTTLANGHGVMDASGNHH 325


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 506 DDGCQRMSHLDGRCQRLSHADDGCQRL 426
           +D C+R+++  G C+ LS+ D    ++
Sbjct: 482 EDFCERLTNKLGECEHLSYRDTNANKV 508


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 380 VRIRDSSTEQHCLCPTTAGNRHQHVTTAG 466
           +++  S+  QH   PTTAG    H+T AG
Sbjct: 742 LKLPPSARAQHV--PTTAGVEWSHITLAG 768


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 334  VISV*KLMYVYIAVISEDSRFVDRTTLPLSDNRW 435
            VI +  L  +Y  V S + RFV R       +RW
Sbjct: 1099 VIGLFMLRMIYFTVTSNEERFVSRLFQDAFRDRW 1132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,701
Number of Sequences: 5004
Number of extensions: 39682
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)