Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326H05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0373 - 17037945-17040641 32 0.32
01_01_0242 + 1997427-1997429,1997893-1998580,2000199-2000234,200... 30 0.98
01_06_0328 + 28507942-28508610,28509669-28510826 30 1.3
01_01_0096 + 737928-739894,740164-740221 30 1.3
01_01_0093 + 727977-729854,729877-729930 29 1.7
01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269... 29 2.3
08_02_0260 + 14990324-14990916,14991055-14991245,14997427-149974... 28 4.0
09_01_0004 - 133130-133897 28 5.2
06_03_0647 + 23122074-23122187,23123423-23123488,23124467-231246... 28 5.2
01_01_0249 + 2047793-2048561,2049861-2049896,2050068-2051012,205... 28 5.2
>09_04_0373 - 17037945-17040641
Length = 898
Score = 31.9 bits (69), Expect = 0.32
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -1
Query: 521 GLSHLDDGC-QRMSHLDGRCQRLSHADDGCQRLSDRGSVVLSTNLESSLITAI 366
GL++L GC Q++ H D + + + A+ G ++SD G L + +S+L T +
Sbjct: 648 GLAYLHTGCEQKIVHCDVKPENILLANGGQVKISDFGLAKLMSREQSALFTTM 700
>01_01_0242 +
1997427-1997429,1997893-1998580,2000199-2000234,
2000786-2001114,2001178-2001855
Length = 577
Score = 30.3 bits (65), Expect = 0.98
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 521 GLSHLDDGCQ-RMSHLDGRCQRLSHADDGCQRLSDRGSVVLSTNLESSL 378
GL +L GC R+ H D + Q + D C +++D G L ES L
Sbjct: 396 GLEYLHHGCNTRIVHFDIKPQNILLDQDFCPKIADFGLAKLCCTKESKL 444
>01_06_0328 + 28507942-28508610,28509669-28510826
Length = 608
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 521 GLSHLDDGCQ-RMSHLDGRCQRLSHADDGCQRLSDRGSVVLSTNLESSLITA 369
GL +L GC R+ H D + + + C ++SD G L +N ES + A
Sbjct: 430 GLEYLHRGCNTRIVHFDIKPHNILLDQEFCPKISDFGMAKLCSNKESIISIA 481
>01_01_0096 + 737928-739894,740164-740221
Length = 674
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 521 GLSHLDDGCQ-RMSHLDGRCQRLSHADDGCQRLSDRGSVVLSTNLESSLIT 372
GLS+L + C R++HLD + Q + D+ +LSD G L +S +IT
Sbjct: 453 GLSYLHEECMMRIAHLDVKPQNILLDDNFNAKLSDFGLCKLIDRDKSQVIT 503
>01_01_0093 + 727977-729854,729877-729930
Length = 643
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 521 GLSHLDDGC-QRMSHLDGRCQRLSHADDGCQRLSDRGSVVLSTNLESSLIT 372
GLS+L + C +R++HLD + Q + D +LSD G L +S +IT
Sbjct: 446 GLSYLHEECTKRIAHLDVKPQNILLDDKFNAKLSDFGLCKLIDRDKSQVIT 496
>01_06_0332 +
28522797-28523536,28525035-28525067,28525956-28526942,
28527153-28527282
Length = 629
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 521 GLSHLDDGCQ-RMSHLDGRCQRLSHADDGCQRLSDRGSVVLSTNLES 384
GL +L GC R+ H D + + + C ++SD G L N ES
Sbjct: 409 GLEYLHRGCSTRIVHFDIKPHNILLDQEFCPKISDFGMAKLCANKES 455
>08_02_0260 +
14990324-14990916,14991055-14991245,14997427-14997495,
14998134-14999221
Length = 646
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 521 GLSHLDDGCQ-RMSHLDGRCQRLSHADDGCQRLSDRGSVVLSTNLESSL 378
GL +L C R+ HLD + Q + D C ++SD G L ES +
Sbjct: 459 GLDYLHHWCNHRVVHLDIKPQNILLDQDFCPKISDFGLAKLCKPKESKI 507
>09_01_0004 - 133130-133897
Length = 255
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 385 DSRFVDRTTLPLS-DNRWQPSSACDNRWQRPS-RCDI 489
D R VDR ++ RWQP++A R QR + RCD+
Sbjct: 15 DRRDVDRRGRTVTRKRRWQPAAAGRRRGQRGTRRCDV 51
>06_03_0647 +
23122074-23122187,23123423-23123488,23124467-23124676,
23124849-23125060,23125641-23126208
Length = 389
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 517 CHILMTVASGCHILMAVASGCHMLMTVASGCRTEAVLFCR 398
C + ++ASG L A+ G +L+ A CR AVL CR
Sbjct: 181 CSVNSSLASGTTALAALVVGRSLLVANAGDCR--AVLCCR 218
>01_01_0249 +
2047793-2048561,2049861-2049896,2050068-2051012,
2051215-2051264
Length = 599
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 521 GLSHLDDGCQ-RMSHLDGRCQRLSHADDGCQRLSDRGSVVLSTNLESSL 378
GL +L C R+ H D + Q + D C +++D G L ES L
Sbjct: 443 GLEYLHHSCNTRIIHFDIKPQNILLDQDFCPKIADFGLAKLCRTKESKL 491
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,499,568
Number of Sequences: 37544
Number of extensions: 232340
Number of successful extensions: 626
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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