Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326H05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U97005-10|AAK72084.1|  646|Caenorhabditis elegans Hypothetical p...    27   6.2  

>U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical
           protein T10E9.1 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 463 WQRPSRCDIRWQPSSRCD 516
           W+ P +CD+ W+   +CD
Sbjct: 159 WRNPRKCDLLWKMFDKCD 176


>U97005-10|AAK72084.1|  646|Caenorhabditis elegans Hypothetical
           protein F19F10.12 protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 337 ISV*KLMYVYIAVISEDS-RFVDRTTLPLSDNRWQPSSACDNRWQRPSRCDIRWQP 501
           I V ++ Y Y  ++ E+   F+ R  +  SD +W+    C      P +  + W+P
Sbjct: 117 IYVTEIAYQYGKLLMEEMLEFISRIEVLPSDKKWKREEFCGKFPNPPFQNPVEWRP 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,311,443
Number of Sequences: 27780
Number of extensions: 228407
Number of successful extensions: 682
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)