Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326H05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   3.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.7  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 315 HLFTH*GNKRIKVDVCIYS 371
           HL  H G+K  K + C YS
Sbjct: 7   HLRNHFGSKPFKCEKCSYS 25


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 369 YIYIHQ-LLYAYYLNV*INEIDKYKIMD 289
           Y+Y+HQ LL  Y LN   N +   K +D
Sbjct: 276 YLYLHQQLLARYELNRLSNGLGPIKDID 303


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 336 NKRIKVDVCIYSSDQ*GFEIRRQNN 410
           NK  K D+ +Y+S   GF+   Q N
Sbjct: 134 NKLWKPDILMYNSADEGFDGTYQTN 158


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 336 NKRIKVDVCIYSSDQ*GFEIRRQNN 410
           NK  K D+ +Y+S   GF+   Q N
Sbjct: 134 NKLWKPDILMYNSADEGFDGTYQTN 158


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 243 PETKQYISYFLFFMKNPLFYIY 308
           PE    I+Y +   + P+FY++
Sbjct: 197 PEPYPDITYEIRLRRRPMFYVF 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,351
Number of Sequences: 438
Number of extensions: 2851
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)