Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326H04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 200 1e-52
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 97 1e-21
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 93 2e-20
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 81 7e-17
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 80 2e-16
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 78 9e-16
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 70 2e-13
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 69 6e-13
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 64 9e-12
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 63 2e-11
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 62 5e-11
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 55 7e-09
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 48 1e-06
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 33 0.020
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 30 0.18
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 28 0.97
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 28 0.97
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 2.2
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 3.0
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 6.8
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 9.0
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.0
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 25 9.0
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 9.0
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 25 9.0
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 25 9.0
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 200 bits (487), Expect = 1e-52
Identities = 84/122 (68%), Positives = 100/122 (81%)
Frame = +2
Query: 155 MSGIASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKL 334
MS + RL EERK WR+DHPFGF A+P K+ DG L+LM W+ IPGK T WEGGLYKL
Sbjct: 1 MSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKL 60
Query: 335 RMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 514
M F ++YP+ PPKC+F PPLFHPNVYPSGTVCLS+L+EE+ W+PAITIKQILLGIQDLL
Sbjct: 61 TMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL 120
Query: 515 NE 520
++
Sbjct: 121 DD 122
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 97.1 bits (231), Expect = 1e-21
Identities = 52/130 (40%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Frame = +2
Query: 164 IASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKLRMI 343
+A RL +E K ++ P G A P D TW+C I G GTP+EGGLY +
Sbjct: 5 MALRRLMKEYKELTENGPDGITAGPSNEDD----FFTWDCLIQGPDGTPFEGGLYPATLK 60
Query: 344 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD-----------WRPAITIKQI 490
F DYP PP KFE FHPNVY GTVC+S+L D W P ++++I
Sbjct: 61 FPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKI 120
Query: 491 LLGIQDLLNE 520
LL + +L E
Sbjct: 121 LLSVMSMLAE 130
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 93.5 bits (222), Expect = 2e-20
Identities = 48/122 (39%), Positives = 66/122 (54%)
Frame = +2
Query: 155 MSGIASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKL 334
MS A RL + K ++D P G A P+ + N+M W I G TP+E G +KL
Sbjct: 1 MSTTARRRLMRDFKRMQQDPPAGVSASPVSD-----NVMLWNAVIIGPADTPFEDGTFKL 55
Query: 335 RMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 514
+ F + YP+ PP KF +FHPNVY +G +CL +L + W P + IL IQ LL
Sbjct: 56 VLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDIL--QNRWSPTYDVAAILTSIQSLL 113
Query: 515 NE 520
N+
Sbjct: 114 ND 115
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 81.4 bits (192), Expect = 7e-17
Identities = 41/113 (36%), Positives = 65/113 (57%)
Frame = +2
Query: 176 RLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKLRMIFKDD 355
R+ +E + +D P G VA P ++ NL ++ + G + + +EGG + L + D+
Sbjct: 6 RIIKEIETLTRDPPPGIVAAPTED-----NLRYFKITMEGPQQSAYEGGKFHLELFLPDE 60
Query: 356 YPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 514
YP PP +F ++HPNV G +CLS L +KDW PA+ I+ +LL IQ L+
Sbjct: 61 YPMMPPNVRFLTKIYHPNVDKLGRICLSTL--KKDWSPALQIRTVLLSIQALM 111
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 80.2 bits (189), Expect = 2e-16
Identities = 41/119 (34%), Positives = 65/119 (54%)
Frame = +2
Query: 164 IASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKLRMI 343
+A R+ E KD P A P+ + +L W+ I G +P+ GG++ L +
Sbjct: 1 MALKRINRELADLGKDPPSSCSAGPVGD-----DLFHWQATIMGPADSPYAGGVFFLSIH 55
Query: 344 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNE 520
F DYP PPK F ++HPN+ +G++CL +L ++ W PA+TI ++LL I LL +
Sbjct: 56 FPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSICSLLTD 112
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 77.8 bits (183), Expect = 9e-16
Identities = 37/91 (40%), Positives = 51/91 (56%)
Frame = +2
Query: 248 PDGSLNLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGT 427
PD NL+ W I G T +EG +K+ M F +YP SPP F P++HPNV SG
Sbjct: 52 PDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGN 111
Query: 428 VCLSLLDEEKDWRPAITIKQILLGIQDLLNE 520
+CL +L ++ W ++ ILL +Q LL E
Sbjct: 112 ICLDILKDK--WSAVYNVQTILLSLQSLLGE 140
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 69.7 bits (163), Expect = 2e-13
Identities = 35/101 (34%), Positives = 54/101 (53%)
Frame = +2
Query: 158 SGIASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKLR 337
S + L ++ K +K+ P GF + + ++ WE I G + T +EGG +
Sbjct: 3 SSASEQLLRKQLKEIQKNPPQGFSVGLVDDK----SIFEWEVMIIGPEDTLYEGGFFHAT 58
Query: 338 MIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 460
+ F DYP PPK KF ++HPNV+P+G VC+S+L D
Sbjct: 59 LSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGD 99
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 68.5 bits (160), Expect = 6e-13
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Frame = +2
Query: 155 MSGIASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKL 334
MS S R+A+E ++D G + + L M G +GTP+EGG + +
Sbjct: 1 MSDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGM-----FRGPEGTPYEGGYFVV 55
Query: 335 RMIFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDWRPAITIKQILLGIQDL 511
+ DYP PPK F+ ++HPNV +G +CL +L ++ W P T+K L+ +Q L
Sbjct: 56 DIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQ--WSPVYTMKSALISLQSL 113
Query: 512 L 514
L
Sbjct: 114 L 114
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 64.5 bits (150), Expect = 9e-12
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +2
Query: 311 WEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQI 490
++GG +K R+ D+YP PPK K ++HPN+ G VCL++L +DW P + + I
Sbjct: 65 YKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNIL--RQDWNPVLNLNSI 122
Query: 491 LLGIQDL 511
L+G+Q L
Sbjct: 123 LVGLQFL 129
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 63.3 bits (147), Expect = 2e-11
Identities = 29/86 (33%), Positives = 47/86 (54%)
Frame = +2
Query: 263 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 442
NL W C G + + GG + + F DYP PP +F ++HPN G VCL++
Sbjct: 35 NLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAI 94
Query: 443 LDEEKDWRPAITIKQILLGIQDLLNE 520
L +++ ++P+I ++ +L I LL E
Sbjct: 95 L-KQQVFKPSIKLRSVLEQILQLLRE 119
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 62.1 bits (144), Expect = 5e-11
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +2
Query: 248 PDGSLNLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNV-YPSG 424
P +++ W+ I G TP+EGG + L + + YP SPP F+ + HPN+ + +G
Sbjct: 28 PVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNG 87
Query: 425 TVCLSLLDEEKDWRPAITIKQILLGIQDLLN 517
VC+ +L + W PA +++ L I LL+
Sbjct: 88 EVCMDIL--KTHWSPAWSLQSACLAIISLLS 116
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 54.8 bits (126), Expect = 7e-09
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 263 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 442
N++ W I G TP+EGG Y +IF DYP PP + P + +CLS
Sbjct: 33 NILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITP--SGRFQTNTRLCLSF 90
Query: 443 LD-EEKDWRPAITIKQILLGI 502
D K W P+ + IL+G+
Sbjct: 91 SDFHPKSWNPSWMVSTILVGL 111
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 47.6 bits (108), Expect = 1e-06
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +2
Query: 263 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLS 439
N+ + G TP+ GG++K+ + +YP P F +FHPN+ SG+VCL
Sbjct: 28 NMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLD 87
Query: 440 LLDEEKDWRP 469
++++ W P
Sbjct: 88 VINQ--TWSP 95
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 33.5 bits (73), Expect = 0.020
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = +2
Query: 176 RLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKLRMIFKDD 355
+L EE + K + + N D + L W I G + E +Y L++ +
Sbjct: 9 KLLEELEKGEKGLGESSCSYGLTNAD-DITLSDWNATILGPAHSVHENRIYSLKIHCDAN 67
Query: 356 YPSSPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDWRPAITIKQILLGIQ 505
YP +PP F + P V +G V +D + W+ +++ +LL ++
Sbjct: 68 YPDAPPIVTFVSRINLPGVDGETGKVNPHKIDCLRHWKREYSMETVLLDLK 118
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 30.3 bits (65), Expect = 0.18
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -3
Query: 384 NLHFGGLDG*SSLKIIRSLYSPPSHGVPFLPGIAHSQVI-KFNEPS---GFFIGLATK 223
N F G+ L + S SP HG P +PG+ H+ + + EPS F GL +K
Sbjct: 442 NPQFSGVLNLPGLGTMPSFPSPYQHGQPQIPGMLHASLSNSYAEPSTQNSFIPGLTSK 499
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 326 TAHLPMESPFYQVSHIPKSLNSMNHLDSS*ASRQNQRDGPYAKLSVLQLN 177
T+ +P PFY S +SLN+ H + + PYAKLS N
Sbjct: 613 TSPIPAR-PFYAQSGSLQSLNTTQHSHQISGGHSGRMNVPYAKLSYTSHN 661
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 213 WSLRQAFRSSAKRALAIPDIFYKNNSIYEPSFNQGL 106
W LR+ +S++ + ++F K NSIY +F++ L
Sbjct: 71 WQLREQEQSNSHISRNENELFSKENSIYNGNFSENL 106
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 215 PFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYK 331
P V+R + L+ TW C++ G+ G +G L+K
Sbjct: 123 PSKVVSRKHAVVEYDLDDQTWNCSVYGRNGIKVDGKLFK 161
>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = +1
Query: 7 IRHEVSRFFIYFYCNFVLVLARL*VKSIVQH 99
I+H + +FF++ + F+L++ + S +Q+
Sbjct: 7 IKHSIFQFFVFPFYYFLLIITEIGFSSCIQY 37
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 471 AGRQSFSSSSSDKHTVPDGYTLGWNSGGSNL 379
A +QS+ + SSD ++P L +NS G +
Sbjct: 249 ASQQSYINHSSDGASLPQSSFLNFNSSGKRV 279
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 375 NANLNHHCSTPMCIHQVRCACHCLMKKKIG 464
N+N ++ CIH V CH +K G
Sbjct: 87 NSNFDNRVGVIECIHLVNFMCHDSLKINFG 116
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 258 EPSGFFIGLATKPKGWSLRQAFRSSAKRALA 166
E SGF + L ++ + WSL + S LA
Sbjct: 773 EDSGFSLKLCSEVQEWSLNKVLNGSINEKLA 803
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 401 HPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNE 520
H N++P L +D D +P T+ Q L IQ + E
Sbjct: 161 HTNIHPEAPTVLPPIDGFTDSQPISTLPQDLSQIQLRIQE 200
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 155 FSTKITRFMSRASIKGYS*CWTID 84
FS +ITRF R + CWT D
Sbjct: 343 FSAEITRFADRNFYDDWWNCWTWD 366
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 333 YV*SSKMIIHQVLQNANLNHHCSTPMCI 416
YV S + Q+L+ + HHC +P +
Sbjct: 96 YVGSDSKLQKQILRELGVLHHCRSPYIV 123
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 294 VKRGLHGKVGCINYV*SS 347
++ G HGK G +NYV SS
Sbjct: 537 LETGWHGKFGSLNYVTSS 554
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,124
Number of Sequences: 5004
Number of extensions: 50279
Number of successful extensions: 133
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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