Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326H03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...   126   2e-30
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    29   0.56 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    28   0.73 
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    27   1.7  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   2.2  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    26   3.0  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   5.2  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   6.8  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   6.8  
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    25   9.0  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    25   9.0  

>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score =  126 bits (304), Expect = 2e-30
 Identities = 58/144 (40%), Positives = 85/144 (59%)
 Frame = +2

Query: 89  LKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEIR 268
           +++L   + + +L +K         ++ ++FW TQPVPK D++     PI+      ++ 
Sbjct: 23  IRELLDRLALRSLIEKEEAAAPPKTYEDFKFWKTQPVPKFDDECTQEGPIDPNTDINQVP 82

Query: 269 AEPYTLPDGFQWDTLNLNEPLVLKELYTLLNENYVEDDDCMFRFDYQTDFLKWALQPPGW 448
            EPY L   F+W T+++     L E++ LL ENYVED   M RF Y ++FL+WAL PPG+
Sbjct: 83  REPYRLLKEFEWATIDVTNDNELSEVHELLTENYVEDATAMLRFAYISEFLRWALMPPGY 142

Query: 449 KMEWHCGVRVVKSGRLVGFISATP 520
             EWH GVRV  S +LV FISA P
Sbjct: 143 VKEWHVGVRVKSSRKLVAFISAVP 166


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 110 MEVLNLQQKPAKTTEEALHKAYQFWSTQPVP-KMDEKIIANEPIEL 244
           MEVL LQ+KP    +  ++K +      PV  K   K++ +E ++L
Sbjct: 588 MEVLELQKKPPYIVQNTMYKLFFGEPLNPVAVKAQRKVMPDENLDL 633



 Score = 28.7 bits (61), Expect = 0.56
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 245 PKSPEEIRAEPYTLPDGFQWDTLNLNEPLV-LKELYTLLNENYVEDDDCMFRFD 403
           P +P  ++A+   +PD    + L+LN P+  + E+   L EN ++ DD +  FD
Sbjct: 613 PLNPVAVKAQRKVMPD----ENLDLNCPINGVIEVPKELLENIIQSDDSLINFD 662


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 476 HEHHNAIPFSNQVVVEPISKNQFGNQNETYNHHLPHNFH 360
           H H +   ++ +   E IS     N +  ++HH  HN H
Sbjct: 546 HNHDHIHKYNEKCDHESISLQNLDNDHHCHHHHENHNMH 584


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = +2

Query: 314 NLNEPLVLKELY---TLLNE--NYVEDDDCMFRFDYQTD 415
           N N   +L+ ++    LLNE  NYV+  DC+F   ++TD
Sbjct: 44  NQNRNQLLRSIHIIQNLLNELDNYVDRSDCLFHSVWRTD 82


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 74  HQNISLKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWST 190
           H+N  + + K   + +NL   P K+ E +L++ Y    T
Sbjct: 736 HENEKILEWKSTDDTINLPMNPHKSLEASLYEKYDLCIT 774


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 26  STANESSSSMPDPTEGHQNISLKDLKMAMEVLNLQQKPAKTTE-EALHKAYQFWSTQPVP 202
           S  N    ++P   +G+++I L    +A EVL L+   ++TT  E +   Y +   + + 
Sbjct: 155 SILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIE 214

Query: 203 KMDEK 217
           + +E+
Sbjct: 215 REEEQ 219


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 165 IKHTNSGQPNRCQKWMKKLLPTSL*NYQNHRKK*GQNPILYLTDS 299
           I H N+ + +R Q W +K +P    +   H+ K        LTDS
Sbjct: 58  IVHLNNLKEDRFQLWFEKYIPQKAADLAVHKSKISAIKQWMLTDS 102


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 434 VEPISKNQFGNQNETYNHHLPHNFH*VKCTVLSILKV 324
           V PI KN    Q++T    LP N+  V  +    LKV
Sbjct: 326 VSPIYKNPVAEQSDTPTRSLPKNYAYVAKSTSPELKV 362


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 41  SSSSMPDPTEGHQNISLKDLKMAMEVLNLQQKPAK 145
           S +S+P    G   +    L+ + EVL+LQ+ P K
Sbjct: 68  SKASIPTNINGLSQVKPSALEKSQEVLSLQKLPIK 102


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 11  GDHGISTANESSSSMPDPTEGHQNISLKDLKMAME 115
           G H I  A     +M    + H+N SL D + A++
Sbjct: 271 GKHAIRYAGRDIEAMRAIAQAHENRSLADFEKALQ 305


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 74  HQNISLKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIAN-EPIELPK 250
           +++I  K+   A E     ++  +TTEE+        S+  V K  EK+I   +   +P 
Sbjct: 101 NESIISKETSQAPETSTGAEEHQETTEESKQSVSNEVSSPDVAKEQEKLIQRAKRFGIPV 160

Query: 251 SPEEIR 268
             E+I+
Sbjct: 161 DDEQIK 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,948
Number of Sequences: 5004
Number of extensions: 50353
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)