Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326H03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U11280-2|AAK77637.1|  452|Caenorhabditis elegans Hypothetical pr...   162   2e-40
U11280-1|AAA19436.1|  450|Caenorhabditis elegans Hypothetical pr...   161   4e-40
U11280-3|AAM97952.1|  403|Caenorhabditis elegans Hypothetical pr...   157   3e-39
Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   3.5  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   3.5  
Z68319-4|CAA92702.1|  884|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U97005-13|AAB52290.1|  868|Caenorhabditis elegans Hypothetical p...    28   4.7  
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p...    28   4.7  
U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U11280-2|AAK77637.1|  452|Caenorhabditis elegans Hypothetical
           protein T17E9.2b protein.
          Length = 452

 Score =  162 bits (393), Expect = 2e-40
 Identities = 86/176 (48%), Positives = 113/176 (64%), Gaps = 6/176 (3%)
 Frame = +2

Query: 11  GDHGISTANESSSSMPDPTEGHQNISLKD-LKMA-MEVLNLQQKPA--KTTEEALHKAYQ 178
           G HG   A  S  S+ D     Q   L D L++A ++V N+   P   +  +EA  K++Q
Sbjct: 14  GHHGDDGAGGSRPSVNDV----QAFKLVDQLRLAGVDVSNMPNIPTAPRDMDEARSKSFQ 69

Query: 179 FWSTQPVPKMDEKIIA--NEPIELPKSPEEIRAEPYTLPDGFQWDTLNLNEPLVLKELYT 352
           FWSTQPVP+MDE + A  N  IE   + +++RAEP++LP GF+W  ++L++   L ELY 
Sbjct: 70  FWSTQPVPQMDETVPADVNCAIEENIALDKVRAEPFSLPAGFRWSNVDLSDEEQLNELYN 129

Query: 353 LLNENYVEDDDCMFRFDYQTDFLKWALQPPGWKMEWHCGVRVVKSGRLVGFISATP 520
           LL  NYVEDDD MFRFDY  DFLKWALQ PG++ EWHCGVR   + RL+ FI A P
Sbjct: 130 LLTRNYVEDDDSMFRFDYSADFLKWALQVPGFRPEWHCGVRADSNNRLLAFIGAVP 185


>U11280-1|AAA19436.1|  450|Caenorhabditis elegans Hypothetical
           protein T17E9.2a protein.
          Length = 450

 Score =  161 bits (390), Expect = 4e-40
 Identities = 81/172 (47%), Positives = 109/172 (63%), Gaps = 2/172 (1%)
 Frame = +2

Query: 11  GDHGISTANESSSSMPDPTEGHQNISLKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWST 190
           G HG   A  S  S+ D       + L  + ++  + N+   P +  +EA  K++QFWST
Sbjct: 14  GHHGDDGAGGSRPSVNDVQALVDQLRLAGVDVS-NMPNIPTAP-RDMDEARSKSFQFWST 71

Query: 191 QPVPKMDEKIIA--NEPIELPKSPEEIRAEPYTLPDGFQWDTLNLNEPLVLKELYTLLNE 364
           QPVP+MDE + A  N  IE   + +++RAEP++LP GF+W  ++L++   L ELY LL  
Sbjct: 72  QPVPQMDETVPADVNCAIEENIALDKVRAEPFSLPAGFRWSNVDLSDEEQLNELYNLLTR 131

Query: 365 NYVEDDDCMFRFDYQTDFLKWALQPPGWKMEWHCGVRVVKSGRLVGFISATP 520
           NYVEDDD MFRFDY  DFLKWALQ PG++ EWHCGVR   + RL+ FI A P
Sbjct: 132 NYVEDDDSMFRFDYSADFLKWALQVPGFRPEWHCGVRADSNNRLLAFIGAVP 183


>U11280-3|AAM97952.1|  403|Caenorhabditis elegans Hypothetical
           protein T17E9.2c protein.
          Length = 403

 Score =  157 bits (382), Expect = 3e-39
 Identities = 73/135 (54%), Positives = 95/135 (70%), Gaps = 2/135 (1%)
 Frame = +2

Query: 122 NLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIA--NEPIELPKSPEEIRAEPYTLPDG 295
           N+   P +  +EA  K++QFWSTQPVP+MDE + A  N  IE   + +++RAEP++LP G
Sbjct: 3   NIPTAP-RDMDEARSKSFQFWSTQPVPQMDETVPADVNCAIEENIALDKVRAEPFSLPAG 61

Query: 296 FQWDTLNLNEPLVLKELYTLLNENYVEDDDCMFRFDYQTDFLKWALQPPGWKMEWHCGVR 475
           F+W  ++L++   L ELY LL  NYVEDDD MFRFDY  DFLKWALQ PG++ EWHCGVR
Sbjct: 62  FRWSNVDLSDEEQLNELYNLLTRNYVEDDDSMFRFDYSADFLKWALQVPGFRPEWHCGVR 121

Query: 476 VVKSGRLVGFISATP 520
              + RL+ FI A P
Sbjct: 122 ADSNNRLLAFIGAVP 136


>Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical
           protein C35A5.4 protein.
          Length = 427

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 212 EKIIANEPIE-LPKSPEEIRAEP-YTLPDGFQWDTLNLNEPLVLKELYTLLNENYVE 376
           +K +A   ++ + KS EE +A P Y   DGF W   N +  L+   +    N NY+E
Sbjct: 10  KKKVAEPAVQKIRKSREEDKATPCYLSNDGFLWTDNNPDLKLIEPRILVSTNYNYLE 66


>Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical
           protein Y57G11C.18 protein.
          Length = 677

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
 Frame = +2

Query: 38  ESSSSMPDPTEGHQN--ISLKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWSTQPVPKMD 211
           +S+ ++P  T  +    I +++L  A ++ +L  +          +AYQ   ++P   + 
Sbjct: 289 QSAFTLPPITRNNSTYIILMRNLSDASQIKHLLMQQFGDKWRGAFEAYQDVMSKPYQAL- 347

Query: 212 EKIIANEPIELPKSPEEIRAEPY--TLPDGFQWDTL----NLNE-PLVLKELYTLLNENY 370
             +I N+P+ LP     + A     T    F  D L    N  E P+V +EL+ ++ EN 
Sbjct: 348 --LINNDPLSLPTMQNILSASDVDPTTKCRFYQDVLYRIRNHPELPIVTEELFDVIQENL 405

Query: 371 VEDDD 385
            + +D
Sbjct: 406 QQQND 410


>Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 296 FQWDTLNLNE-PLVLKELYTLLNENYVEDDDCMFRFDYQTDFLKW 427
           F   T  ++E P +L +L+  L E  V++    F F Y+T  LKW
Sbjct: 394 FAEPTCRVSEAPRLLTDLFKKLKEMVVQEKRIKFIFYYKTYILKW 438


>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical
           protein T08G11.1b protein.
          Length = 3185

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +2

Query: 86  SLKDLKMA-MEVL-NLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPE 259
           S+ DLK+A M V+ +L       +++ L    +   + P PK DEK  A + +E+P +  
Sbjct: 742 SIDDLKLAKMRVIGDLPNIVIGISDDRLIGLMKLGLSIPTPKADEKTKAEKELEVPVAKI 801

Query: 260 EIRAEPYTL 286
           + RA+  T+
Sbjct: 802 KDRAKMRTI 810


>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical
           protein T08G11.1a protein.
          Length = 3212

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +2

Query: 86  SLKDLKMA-MEVL-NLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPE 259
           S+ DLK+A M V+ +L       +++ L    +   + P PK DEK  A + +E+P +  
Sbjct: 742 SIDDLKLAKMRVIGDLPNIVIGISDDRLIGLMKLGLSIPTPKADEKTKAEKELEVPVAKI 801

Query: 260 EIRAEPYTL 286
           + RA+  T+
Sbjct: 802 KDRAKMRTI 810


>Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 296 FQWDTLNLNE-PLVLKELYTLLNENYVEDDDCMFRFDYQTDFLKW 427
           F   T  ++E P +L +L+  L E  V++    F F Y+T  LKW
Sbjct: 394 FAEPTCRVSEAPRLLTDLFKKLKEMVVQEKRIKFIFYYKTYILKW 438


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 89   LKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEI 265
            +K +++ MEVL        T EE L +A+Q  +++   +  ++I+ N   E  K  EEI
Sbjct: 3838 IKTIQLRMEVLKRVSMNQSTAEELLQEAFQ--NSEQQMETFQRIVQNVHWEETKLTEEI 3894


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 89   LKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEI 265
            +K +++ MEVL        T EE L +A+Q  +++   +  ++I+ N   E  K  EEI
Sbjct: 3838 IKTIQLRMEVLKRVSMNQSTAEELLQEAFQ--NSEQQMETFQRIVQNVHWEETKLTEEI 3894


>Z68319-4|CAA92702.1|  884|Caenorhabditis elegans Hypothetical
           protein T23G7.4 protein.
          Length = 884

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/36 (38%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = +2

Query: 68  EGHQNISLKDLKMAMEVLNL-QQKPAKTTEEALHKA 172
           E H + +++DL++A++ + L +Q  AK +EE +HKA
Sbjct: 175 ENHADATIEDLRIAIKNMELSKQNEAKRSEE-MHKA 209


>U97005-13|AAB52290.1|  868|Caenorhabditis elegans Hypothetical
           protein F19F10.11b protein.
          Length = 868

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 11  GDHGISTANESSSSMPDPTEGHQNISLKDLKMAMEVLNLQQKPAKTTEEALHKAYQ 178
           G+   ST+N S   +P P++  + IS  DL M+ +       P K  E+++  ++Q
Sbjct: 54  GNSTASTSNFSREELPGPSDVVRTISKNDLMMSRKTAAPSSCPPK--EQSMKPSFQ 107


>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
           protein F19F10.11a protein.
          Length = 1121

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 11  GDHGISTANESSSSMPDPTEGHQNISLKDLKMAMEVLNLQQKPAKTTEEALHKAYQ 178
           G+   ST+N S   +P P++  + IS  DL M+ +       P K  E+++  ++Q
Sbjct: 54  GNSTASTSNFSREELPGPSDVVRTISKNDLMMSRKTAAPSSCPPK--EQSMKPSFQ 107


>U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical
           protein F53B1.2 protein.
          Length = 483

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 119 LNLQQKPAKTTEEALHKAYQFWS 187
           L  + +P  T +E LHKA+  WS
Sbjct: 288 LQCEARPNTTMQEKLHKAFHIWS 310


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 191 QPVPKMDEKIIANEPIELPKSPEEIRAEPYTLPDGFQ 301
           +P P +    I   P   P  PEE  A PYT+P G Q
Sbjct: 538 KPAPPLINPYIPPPP---PPHPEEEYATPYTVPPGKQ 571


>Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.1 protein.
          Length = 356

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 317 LNEPLVLKELYTLLNENYVEDDDCM 391
           L+EP+  KE  +  NENY+    CM
Sbjct: 5   LSEPVTKKESASCANENYLVGSSCM 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,140,856
Number of Sequences: 27780
Number of extensions: 283831
Number of successful extensions: 888
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)