Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326H01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    27   2.2  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    26   3.0  

>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 224 CNGDSG*IMIWITHYPL*VLKLGMVLIVRKLATMLLLVF 340
           C G  G + I+ T      + L  + + RK+ TMLL VF
Sbjct: 243 CTGSVGQLFIFFTLEKFGSITLVTITLTRKIFTMLLSVF 281


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = -3

Query: 477 LINLFSCLQSTEKNRSCS*TTNRARSYKINASPIIHSRIV*GYINRKTRRSIVASFLTIN 298
           LINL  C +     R+CS T    RSY  N S ++    +   +N    R    +  T  
Sbjct: 229 LINL--CCKRNPWKRACSQTDGTYRSYVHNPSTLLSILPISRELNSLLNRIFDRNPKTRI 286

Query: 297 TIPSLRTYRG*C 262
           T+P L T    C
Sbjct: 287 TLPELSTLVSNC 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,005
Number of Sequences: 5004
Number of extensions: 43134
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)