Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326H01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0531 - 9240635-9240957,9241742-9241865,9241961-9242103,924...    29   2.3  
09_03_0016 - 11552732-11552835,11553685-11553811,11553918-115541...    29   3.0  
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211...    27   6.9  
06_01_0128 - 1002544-1002918,1003059-1003160                           27   9.1  
05_03_0149 - 8935172-8935254,8935792-8937319                           27   9.1  

>03_02_0531 -
           9240635-9240957,9241742-9241865,9241961-9242103,
           9242205-9242340,9242468-9242796,9243236-9243305
          Length = 374

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 452 KVPKRTEVVPEPQTELVLIKSMHRRLFTLGSFKGTS 345
           K    + V P P++E  +++S + R FT G  KG++
Sbjct: 43  KASASSSVPPTPRSETEILQSSNLRKFTFGELKGST 78


>09_03_0016 -
           11552732-11552835,11553685-11553811,11553918-11554144,
           11554247-11554401,11554538-11554615,11555452-11555523,
           11555631-11555789,11556873-11556979
          Length = 342

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 289 WDGVDCKKTCDYAPPCFPIDV 351
           WDGV+C+ T D  P    ID+
Sbjct: 71  WDGVECRNTSDNIPRIISIDL 91


>05_01_0273 +
           2115257-2115589,2115706-2115766,2115876-2115970,
           2116072-2116184,2116278-2116551,2116923-2117036,
           2117169-2117233,2117325-2117466,2117547-2117666,
           2118153-2118241,2118349-2118433
          Length = 496

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 210 YFYILCYFGSRYNSSRYQS 154
           YF I CY  SRYNS +  S
Sbjct: 109 YFSIACYLHSRYNSKKSSS 127


>06_01_0128 - 1002544-1002918,1003059-1003160
          Length = 158

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 416 QTELVLIKSMHRRLFTLGSFKGTSIGKQG 330
           +T+ V+++++    FT+G  +G S GK+G
Sbjct: 63  ETDQVVVQAVASLSFTIGGARGVSAGKRG 91


>05_03_0149 - 8935172-8935254,8935792-8937319
          Length = 536

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 440 RTEVVPEPQTELVLIKSMHRRL 375
           R  V P P T+LV  ++MHRRL
Sbjct: 365 RNSVWPVPSTDLVQEQAMHRRL 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,219,076
Number of Sequences: 37544
Number of extensions: 256730
Number of successful extensions: 518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)