Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326G12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF317421-1|AAK69599.1|  235|Caenorhabditis elegans lysosomal-ass...    29   1.5  
AC006777-6|AAK72307.1|  517|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical ...    29   2.7  
U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine rece...    28   3.5  
Z71262-5|CAA95818.1|  606|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical
           protein C05E11.3 protein.
          Length = 235

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 181 YKCVAMIAVNCYIETIIMAAIYNCNCYISKYATNFYVIFCIIF 53
           Y  + + AV+  +E   +  IYNCN Y+ + +   Y+ +C+ F
Sbjct: 185 YSLMIVYAVSLALEFWFIVVIYNCNRYLDERSD--YMKYCLAF 225


>AF317421-1|AAK69599.1|  235|Caenorhabditis elegans
           lysosomal-associated transmembraneprotein protein.
          Length = 235

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 181 YKCVAMIAVNCYIETIIMAAIYNCNCYISKYATNFYVIFCIIF 53
           Y  + + AV+  +E   +  IYNCN Y+ + +   Y+ +C+ F
Sbjct: 185 YSLMIVYAVSLALEFWFIVVIYNCNRYLDERSD--YMKYCLAF 225


>AC006777-6|AAK72307.1|  517|Caenorhabditis elegans Hypothetical
           protein Y46H3D.4 protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/82 (28%), Positives = 40/82 (48%)
 Frame = -1

Query: 266 NYY*ETGACIVLGNLFMSVFSTNCQNDVI*MCGNDCGKLLYRNYNNGSNL*LQLLYKQIC 87
           N +  + AC+ L N    +F TN   D     GN+C  +   N NNG+N   +L +  I 
Sbjct: 433 NDFLNSTACLFLMN---QLFLTNVVFD-----GNECEAIDRTNQNNGANWIFRLNF-FIL 483

Query: 86  YKFLCDFLYYISKTKIFFYNKY 21
           +      +++I K  + FY+++
Sbjct: 484 FSNNSILIFFILKVFVIFYSEH 505


>AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical
           protein Y66H1A.4 protein.
          Length = 244

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 224 LFMSVFSTNCQNDVI*MCGNDCGKLLYRN 138
           + + VFS  CQ+D++  C N  GK+ Y N
Sbjct: 61  VLVGVFSHQCQDDIV--CNNTSGKIPYFN 87


>U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine
           receptor, class v protein29 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 181 YKCVAMIAVNCYIETIIMAAIYNCNCYISKYATNFYVI 68
           + CV++  +  Y+  +++  +    CY   Y T FY I
Sbjct: 12  FYCVSIFTIPLYL--MVLVCLLKLRCYSKTYVTTFYTI 47


>Z71262-5|CAA95818.1|  606|Caenorhabditis elegans Hypothetical
           protein F22D6.6 protein.
          Length = 606

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 368 D*RDDPRCHKRTHVFVVSDV 309
           D + DPR H   HV +VSDV
Sbjct: 553 DDKKDPRAHMAKHVLMVSDV 572


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,712,201
Number of Sequences: 27780
Number of extensions: 210364
Number of successful extensions: 497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)