Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326G12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   3.3  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   4.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   7.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 320 VSDVIKRTLSIYLQCYLLNY 261
           V+D++ R +++ L+  L+NY
Sbjct: 29  VNDIVSRNITMVLENLLMNY 48


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +2

Query: 80  ICSIFAYITIAIINCCHYYSFDITIYRNHCHTFISHHSDS---SLRILT*INYLTLCM 244
           I   FA  T A        +F +  Y   CH FISH       +++ +  I  L LC+
Sbjct: 128 IIQSFAAETSANATVLTITAFTVERYIAICHPFISHTMSKLSRAVKFIIVIWLLALCL 185


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 146 YRNYNNGSNL*LQLLYK 96
           Y NYNN +N   +L YK
Sbjct: 91  YSNYNNYNNYNKKLYYK 107


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 146 YRNYNNGSNL*LQLLYKQICY 84
           Y NYNN  N   + LY  I Y
Sbjct: 337 YNNYNNNYNNNYKKLYYNINY 357


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 146 YRNYNNGSNL*LQLLYKQICY 84
           Y NYNN  N   + LY  I Y
Sbjct: 94  YNNYNNNYNNYNKKLYYNINY 114


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 5   TINILNIYYKKKS 43
           TI ILN++Y+K S
Sbjct: 316 TIVILNVHYRKPS 328


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 458 TVDASLCAYCVHIIKRKCD 402
           TVDA++     H I   CD
Sbjct: 565 TVDAAIYGNISHFINHSCD 583


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,174
Number of Sequences: 438
Number of extensions: 3127
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)