Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326G11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 30 0.24
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 28 0.97
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 1.7
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc... 27 2.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 2.2
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 26 3.0
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 3.9
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 25 6.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.0
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.0
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.24
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 405 DYGFQNVIRLIPCEDAFET 461
DY F +++R++PCE F T
Sbjct: 211 DYAFDDILRVLPCEHVFHT 229
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.9 bits (59), Expect = 0.97
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 253 LFSKLIEYICFIATELDVMVEIHW 182
+FS ++EYIC +T+ + V ++W
Sbjct: 1442 VFSAILEYICQASTKTAINVSLYW 1465
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 450 AFETIWEAHIADNVHRTLLETMR 518
+FE WE +I DN+H T L+ +
Sbjct: 4585 SFECPWEHYITDNLHDTCLKIQK 4607
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 397 ILFNITSSLTLVTQNRFKLKYFGTSVLLPLRQSMIYDT 284
++F I SL L+ N + K + PL++ M+Y++
Sbjct: 779 VVFKIAESLILLKPNEVQSKNNFLNKCTPLQKGMLYES 816
>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 319 LLPLRQSMIYDTLDLVQTS-LKSLFSKLIEYICFIATELDVM 197
L+ +QS + +DL + S + L K+ Y+C I T +DV+
Sbjct: 27 LMEEKQSNLSVAVDLTKKSEILELVDKIGPYVCVIKTHIDVV 68
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 71 FNQKIFSFISDLKY-PLILAFFIF 3
FN+K FS ISDL + P++ FF +
Sbjct: 1340 FNEKHFSLISDLAWLPVLYNFFFY 1363
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -2
Query: 418 WKP*SCVILFNITSSLTLVTQNRFKLKYFGTSVLLPLRQSMIYDTLDLVQTSLKSLFSKL 239
++P I ++T S+ V + F F S +L + ++ Y+T + L S++ L
Sbjct: 303 YRPTHETIKHSLTYSIVEVALSLFTFALFTNSSILIVAGAVFYNTSGADTSDLFSIYDLL 362
Query: 238 IEYI 227
EY+
Sbjct: 363 KEYV 366
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 204 SSSVAMKQMYSMSLENKLLSEVWTRSKVSYIIDC 305
S+SVA+KQMY+ S + +SEV + +S ++ C
Sbjct: 1315 STSVAVKQMYAESEGDSYVSEV--LNTLSEVVHC 1346
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 335 LWNFSITPIEAVYDI*YFRSSP 270
L F++ EAV+D+ YFR +P
Sbjct: 58 LQRFNLPYAEAVFDLSYFRKNP 79
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -2
Query: 448 SSQGINLITFWKP*SCVILFNITSSLT 368
++QG+N + W + I+ N+T+++T
Sbjct: 919 TTQGMNTTSIWNSSNSTIVSNVTATIT 945
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = -1
Query: 392 IQYNIVVNFSNAKPIQIKILWNFSI 318
+Q + +++ SN+KP+ ++LW S+
Sbjct: 2954 LQASSLLSSSNSKPLLTRVLWLLSV 2978
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,960
Number of Sequences: 5004
Number of extensions: 37393
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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