Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326G11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0550 + 4044683-4044784,4044862-4044975,4045277-4045360,404...    29   2.3  
11_06_0599 + 25395606-25395705,25396465-25396544,25396901-253969...    27   6.9  
03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416...    27   9.1  

>02_01_0550 +
           4044683-4044784,4044862-4044975,4045277-4045360,
           4045818-4045917,4046923-4046971,4047071-4047158,
           4047251-4047361,4047771-4047833,4047942-4048052,
           4048517-4048582,4048689-4048766,4049553-4049630,
           4049784-4049850,4049930-4050015,4050301-4050333,
           4050426-4050458,4050754-4050854,4050986-4051071,
           4051478-4051584,4051683-4051839,4051854-4051984
          Length = 614

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 153 DTDITVTIKGTLKKKY---N*TCGCVNGLLI*SENLFIYFRS 37
           D DI V IKG+L  K+     TC C N +L+  E ++  F S
Sbjct: 338 DADIDVAIKGSLAAKFRNSGQTCVCANRILV-QEGIYEKFAS 378


>11_06_0599 +
           25395606-25395705,25396465-25396544,25396901-25396966,
           25397076-25397123,25397226-25397293,25397404-25397476,
           25397573-25397734,25398042-25398236,25398325-25398413,
           25398487-25398676
          Length = 356

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 520 ILIVSRSVRCTLSAMCASQIVSKASSQGINLITFWKP 410
           I +V  S+   L++ CA  +  K  SQ + L+TF +P
Sbjct: 179 INVVGHSMGGALASFCALDLSVKYGSQEVQLMTFGQP 215


>03_02_0693 -
           10441253-10441294,10441404-10441511,10441594-10441677,
           10441765-10443062,10443111-10444804,10444890-10444957,
           10445057-10445186,10445292-10445415,10445551-10445711,
           10446714-10446868
          Length = 1287

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = +3

Query: 189 ISTMTSSSVAMKQMYSMSLENKLLS-EVWTRSKVSYIIDCLNGSNTEVPKYFNLNRFCVT 365
           + T +S     +  Y M+ +N+LLS E  +RS  +       G N+EV  Y +     +T
Sbjct: 290 VDTFSSMDKGKENNYVMAGKNRLLSEEALSRSSDARSAGSSKGYNSEVDIYVD----ALT 345

Query: 366 KVNDDVILNRITQDYGFQNVIRL---IPCED 449
            ++ +V  +   +D+G + ++ +    PC D
Sbjct: 346 TMDSEVETDTEHRDHGHRALVPVESSKPCSD 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,194,605
Number of Sequences: 37544
Number of extensions: 186927
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)