Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326G11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical pr...    32   0.29 
Z70687-1|CAA94616.3|  403|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U28944-17|ABB88239.1|  222|Caenorhabditis elegans Hypothetical p...    28   4.7  

>Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical
           protein F01D4.7 protein.
          Length = 341

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -1

Query: 482 CYVCFPNSFKGIFARYQPYYILETIVLRYSIQYNIVVNFSN--AKPIQIKILWNF 324
           C + FP +F   F   + Y+IL +++   SI Y   +N+SN  A    IKIL+ F
Sbjct: 13  CQIAFPGAFHPAFLLVKLYHILLSVISMGSIIY-FFLNYSNLLAFHFNIKILFFF 66


>Z70687-1|CAA94616.3|  403|Caenorhabditis elegans Hypothetical
           protein T14C1.1 protein.
          Length = 403

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 476 VCFPNSFKGIFARYQPYYILETIVLRYSIQYNI 378
           VC P   +  F+R +  + L T V+ +S+ YN+
Sbjct: 176 VCLPEKVRRAFSRKETVHFLATCVVIFSVLYNV 208


>U28944-17|ABB88239.1|  222|Caenorhabditis elegans Hypothetical
           protein C18A3.11 protein.
          Length = 222

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -2

Query: 403 CVIL-FNITSSLTLVTQNRFKLKYFGTSVLLPLRQSMIYDTLDLVQT 266
           CV+L FN T  LT++   R +         LP      YD LDL  T
Sbjct: 84  CVLLGFNQTEHLTVLENTRAERYMVAIKTTLPTDNCPSYDNLDLFVT 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,725,450
Number of Sequences: 27780
Number of extensions: 201813
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)