Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326G11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   0.82 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   1.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 97  CLVIFFL*GAFNSYCNVCICNR 162
           C V FF      SYC  CI  R
Sbjct: 284 CWVPFFCVNIVTSYCKTCISGR 305


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 289 DTLDLVQTSLKSLFSKLIEYICFIATELDVMVEIHWL 179
           D +  +   LKS   KL+   C ++ + D++  I W+
Sbjct: 42  DKMKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWV 78


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 427 ITFW-KP*SCV--ILFNITSSLTLVTQN 353
           I FW KP +    +   +TS LTL TQN
Sbjct: 233 IAFWIKPEAIPARVTLGVTSLLTLATQN 260


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 124 AFNSYCNVCICNRVKIYSITNVFQP*R 204
           AF+    + IC+ +++Y+I+ + +P R
Sbjct: 134 AFSMERYLAICHPLRVYTISGLKRPIR 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,512
Number of Sequences: 438
Number of extensions: 2272
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)