Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326G10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0229 - 13006869-13007017,13007925-13008089,13008178-130083... 31 0.56
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700... 29 1.7
06_03_1478 - 30420097-30420651 29 3.0
06_02_0011 - 10569471-10572245 28 4.0
10_08_0851 - 21065832-21065948,21066361-21066705,21067181-210674... 28 5.2
01_06_0208 - 27540077-27540992,27541310-27541497 28 5.2
12_01_0257 + 1898950-1899636 27 6.9
09_02_0517 + 10139859-10140245 27 9.1
05_04_0375 + 20750170-20751011,20751707-20751865,20752894-207531... 27 9.1
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70... 27 9.1
03_04_0124 - 17480282-17480647 27 9.1
02_01_0039 - 271926-273503 27 9.1
>04_03_0229 -
13006869-13007017,13007925-13008089,13008178-13008332,
13010276-13011021
Length = 404
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 162 YPRPGRDGASTLQQTPSLDASSALRPFTSRTRFS 263
+PR G DG L QTPS A+ AL T+ T S
Sbjct: 83 FPRRGEDGVHLLSQTPSSPAAWALSAATTGTAAS 116
>10_03_0010 +
7007694-7007888,7007994-7008059,7008161-7008334,
7009232-7009306,7009384-7009510,7012280-7012371,
7012496-7012566,7012683-7012792,7013016-7013053,
7013825-7013960,7014382-7014456,7014574-7014697,
7014917-7015013,7015426-7015451,7016180-7016255,
7016499-7016636,7016735-7016872
Length = 585
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 226 PPFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELC-PSPTDQAAVL 363
PP +L + +FP PA D +L L +RH C P P V+
Sbjct: 17 PPPPFILRQLSFPAAVPALDLDILCCRLSRRHRLACLPQPPSDVLVV 63
>06_03_1478 - 30420097-30420651
Length = 184
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 172 GRGYRVHHDRCRAPFQEKQFILG*R 98
G+ YR DRC+APF+ +Q + G R
Sbjct: 103 GKRYRYVCDRCKAPFETRQALGGHR 127
>06_02_0011 - 10569471-10572245
Length = 924
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +1
Query: 253 PAFPRCKPAPDDSVLTQALLKRHTEL--CPSPTDQAAVLSLVTKLQTVLDNIVVAPGEFA 426
PAFP K P SVL L R+ C S + A++++++ L T L +
Sbjct: 227 PAFPPYKHQPATSVLRSNYLDRYKLFVSCNSTSFVASLVTVILLLSTELSKHGIRSKAVI 286
Query: 427 ACQLEEVR-QVGSYKKG 474
C + ++ VG+Y G
Sbjct: 287 VCVVADLLCLVGAYAAG 303
>10_08_0851 -
21065832-21065948,21066361-21066705,21067181-21067489,
21067574-21067648,21067754-21067917,21067994-21068432
Length = 482
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 183 GASTLQQTPSLDASSALRPFTSRTRFS*MQTGTRRLRAHSGP 308
G + TPS+DA + R F+ + FS G+ HSGP
Sbjct: 20 GCCSSSTTPSMDAVNLSRTFSDVSSFSEEHGGSGSSVDHSGP 61
>01_06_0208 - 27540077-27540992,27541310-27541497
Length = 367
Score = 27.9 bits (59), Expect = 5.2
Identities = 23/75 (30%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Frame = +3
Query: 303 GPSKEAHGAMSVTYRSSSCFEPRHETADSIGQYCCGSRRICSLP--TRRSAASWVLQEGD 476
GPS EA GA R + R A Q CG + P RR SW ++G
Sbjct: 65 GPSAEAAGAWGSVVRLARARRRRAGAACPARQQRCGGFATAARPGNPRRGDVSWDARDGA 124
Query: 477 NDGREECC*YRGHHE 521
R GH E
Sbjct: 125 RAARRRRQRRVGHAE 139
>12_01_0257 + 1898950-1899636
Length = 228
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 432 PTRRSAASWVLQEGDNDG 485
PTRR+AASW+ D DG
Sbjct: 58 PTRRTAASWLAVTFDGDG 75
>09_02_0517 + 10139859-10140245
Length = 128
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 132 GARHRSWWTRYPRPGRDGASTLQQTPSLDASSA 230
G RHR+ W R+PR R G +T + AS A
Sbjct: 6 GGRHRARWRRWPR-ARRGRTTAAKEELAAASMA 37
>05_04_0375 +
20750170-20751011,20751707-20751865,20752894-20753146,
20753287-20753316
Length = 427
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 138 RHRSWWTRYPRPGRDGASTLQQ 203
R R WW P P GAS+L++
Sbjct: 33 RRRWWWWAAPLPSASGASSLER 54
>04_01_0070 -
706640-706747,707221-707307,707397-707502,707585-707693,
707766-708145,708508-708601,709351-709475,709633-709674,
710822-710892,710979-711060,711157-711277,712404-712713
Length = 544
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 226 PPFDLLLAEPAFPRCKPAPD 285
PPF L LA P FP P PD
Sbjct: 36 PPFLLDLASPPFPPKNPRPD 55
>03_04_0124 - 17480282-17480647
Length = 121
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 135 ARHRSWWTRYPRPGRDGASTLQQT 206
A R WW +PGRDGA+ L +T
Sbjct: 2 AELRRWWED-AQPGRDGAAALVET 24
>02_01_0039 - 271926-273503
Length = 525
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 165 PRPGRDGASTLQQTPSLDASSALRPFTSRTRF 260
P P R G+ST + + S RP T+ TRF
Sbjct: 232 PAPSRVGSSTSSSAAIVASKSPTRPGTTGTRF 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,904,491
Number of Sequences: 37544
Number of extensions: 290135
Number of successful extensions: 764
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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